Dockerfile

FROM rocker/r-ver:4.0.5

MAINTAINER Emmanuel Blondel "emmanuel.blondel@fao.org"

# system libraries for LaTeX reporting & keyring
RUN apt-get update && apt-get install -y \
    sudo \
    pandoc \
    pandoc-citeproc \
    texlive-xetex \
    texlive-latex-base \
    texlive-latex-recommended \
    texlive-fonts-recommended \
    texlive-fonts-extra \
    texlive-formats-extra \
	  libsodium-dev \
    libsecret-1-dev
    
# general system libraries
# Note: this includes rdf/redland system libraries
RUN apt-get update && apt-get install -y \
    cmake \
    curl \
    default-jdk \
    fonts-roboto \
    ghostscript \
    hugo \
    less \
    libbz2-dev \
    libglpk-dev \
    libgmp3-dev \
    libfribidi-dev \
    libharfbuzz-dev \
    libhunspell-dev \
    libicu-dev \
    liblzma-dev \
    libmagick++-dev \
    libopenmpi-dev \
    libpcre2-dev \
    libssl-dev \
    libv8-dev \
    libxml2-dev \
    libxslt1-dev \
    libzmq3-dev \
    lsb-release \
    qpdf \
    texinfo \
    software-properties-common \
    vim \
    wget
    
RUN apt-get install -y librdf0-dev
RUN install2.r --error --skipinstalled --ncpus -1 redland
RUN apt-get install -y \
    libcurl4-openssl-dev \
    libgit2-dev \
    libxslt-dev \
    librdf0 \
    redland-utils \
    rasqal-utils \
    raptor2-utils

# geospatial system libraries
RUN /rocker_scripts/install_geospatial.sh

# install R core package dependencies
RUN install2.r --error --skipinstalled --ncpus -1 httpuv
RUN R -e "install.packages(c('remotes','jsonlite','yaml'), repos='https://cran.r-project.org/')"
# copy app
COPY . /srv/calipseo-shiny

# install R app package dependencies
RUN R -e "source('./srv/calipseo-shiny/install.R')"

#etc dirs (for config)
RUN mkdir -p /etc/calipseo-shiny/

EXPOSE 3838

CMD ["R", "-e shiny::runApp('/srv/calipseo-shiny',port=3838,host='0.0.0.0')"]