Full length ORF

[apoosakkannu]

Hi, I am using the orfipy. It sounds great tool for my recent work. I wonder could it be possible only to get full length orf not the partial orfs? Please let me know if there is any possibility?

[urmi-21]

Hi @apoosakkannu! Glad to know orfipy could be helpful for your research. However, I am not sure if I understand your question. What do you mean by full-length ORFs? By default, orfipy will report only complete orfs within the specified length thresholds. If you want the longest ORF you can run with the parameter --longest . Partials ORFs are not reported till you provide --partial-3 and --partial-5 options. Let me know if this answers your question.