Expression Data Types

On this page we will provide expression data derived from RNA. Specifically Raw data (including sequence reads trimmed and untrimmed) and Count Matrices.

Feature Lists and FastAs which will include list of discovered products (eg sRNA, lncRNA, and corresponding FastAs) are found here

A. pulchra

sub-effort D

RAW

RNA-seq:

• https://owl.fish.washington.edu/nightingales/A_pulchra/30-789513166/

sRNA-seq:

• https://owl.fish.washington.edu/nightingales/A_pulchra/30-852430235/

  • FastQ prefix: sRNA-

TRIMMED

RNA-seq:

• https://gannet.fish.washington.edu/Atumefaciens/20230519-E5_coral-fastqc-fastp-multiqc-RNAseq/A_pulchra/trimmed/

  • Trimming details

sRNA-seq:

• 20230620-E5_coral-fastqc-flexbar-multiqc-sRNAseq/A_pulchra/trimmed/

  • Trimming details

Count Matrices

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P. evermanni

sub-effort E

TRIMMED

RNA-seq:

• https://gannet.fish.washington.edu/Atumefaciens/20230519-E5_coral-fastqc-fastp-multiqc-RNAseq/P_evermanni/trimmed/

  • Trimming details

sRNA-seq:

• https://gannet.fish.washington.edu/Atumefaciens/20230620-E5_coral-fastqc-flexbar-multiqc-sRNAseq/P_evermanni/trimmed/

  • Trimming details

RAW

RNA-seq:

• https://owl.fish.washington.edu/nightingales/P_evermanni/30-789513166/

sRNA-seq:

• https://owl.fish.washington.edu/nightingales/P_evermanni/30-852430235/

  • FastQ prefix: sRNA-

Count Matrices

• Coding
• lncRNA

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P. meandrina

sub-effort F

TRIMMED

RNA-seq:

• https://gannet.fish.washington.edu/Atumefaciens/20230519-E5_coral-fastqc-fastp-multiqc-RNAseq/P_meandrina/trimmed/

  • Trimming details

sRNA-seq:

• https://gannet.fish.washington.edu/Atumefaciens/20230620-E5_coral-fastqc-flexbar-multiqc-sRNAseq/P_meandrina/trimmed/

  • Trimming details

RAW

RNA-seq:

• https://owl.fish.washington.edu/nightingales/P_meandrina/30-789513166/

sRNA-seq:

• https://owl.fish.washington.edu/nightingales/P_meandrina/30-852430235/

  • FastQ prefix: sRNA-

Count Matrices

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