Overview

The purpose of this software and data is to enable reproduction and facilitate extension of the computational results associated with Ref. [1].

For step-by-step instructions on reproducing the figures in Ref. [1], see REPRODUCEME.md.

Installation and Testing

Python can be obtained at python.org. The dependencies required can be installed via

pip install -r requirements.txt

To test the installation, navigate to the parent directory and invoke

python -m doctest src/wells.py REPRODUCEME.md -v > test/results.txt

Data

The raw data can be found in the directory data/.

Documentation

The documentation can be found in doc/. A pdf version of the documentation is available at doc/manual.pdf. Other forms of documentation can be built using sphinx.

Citing This Work

To cite the manuscript, use Ref. [1]. To cite the software and experimental data, use Ref. [2].

References

1. DeJaco, R. F.; Majikes, J. M.; Liddle, J. A.; Kearsley, A. J. Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA. Biophysical Journal, 2023, doi: 10.1016/j.bpj.2023.03.002.

2. DeJaco, R. F. Software and Data associated with Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA, National Institute of Standards and Technology, 2023, doi: 10.18434/mds2-2762.