v0.4.0

0.4.0 (2023-06-08)

Features

• move clinvar database code (import etc.) to annonars (#86) (457be46)
• switch to annonars for frequency db creation (#81,#77,#20) (#83) (bb27686)

Code Refactoring

• move from linked-hash-map to indexmap (#82) (#87) (f9e354d)

v0.3.1

0.3.1 (2023-05-04)

Bug Fixes

• use copy number to fill in genotypes for CNVs (#72) (5585a08)

v0.3.0

0.3.0 (2023-05-03)

Features

• add genotype counting (#70) (c40f83c)

Bug Fixes

• only copy samples from input VCF header (#69) (316b123)

v0.2.1

0.2.1 (2023-05-02)

Bug Fixes

• adjust non-adjacent exon recognition (#67) (96437e4)
• allow multiple bases in BND ALT (#63) (e5b93d5)
• properly recognize .gz/.zst extension (#66) (6960521)
• skipping "*" ALT alleles (#65) (95b2b61)

v0.2.0

0.2.0 (2023-04-24)

Features

• allow annotation from maelstorm cov/mq BED files (#51) (#55) (f3966ac)
• annotation of structural variants (#46) (#52) (8da1d38)
• change database path setup (#48) (#60) (b26671f)
• implement command to copy rocksdb database (#45) (#47) (3c8543f)
• switch from flatbuffers to protobuf (#15) (#57) (3fe3322)

Bug Fixes

• issue on negative CDS position (#49) (#58) (9a63e30)

v0.1.1

0.1.1 (2023-04-06)

Bug Fixes

• release 0.1.1 (5565d93)

v0.1.0

0.1.0 (2023-04-06)

Features

• adding command "db create seqvars-clinvar" (#24) (#25) (fd4c523)
• allow mehari to write out VarFish compatible TSV (#34) (#35) (72c6832)
• command "verify seqvars" allows to compare to VEP (#21) (#37) (b8761e3)
• frequency annotation with database (#12) (#13) (f63f8c2)
• implement seqvar frequency db construction (#2) (#5) (01fc64c)
• implementing "annotate seqvars" (#3) (#7) (6400ed1)
• transcript based annotation (#11) (#14) (6677899)
• transcript database building (#1) (#8) (bcff954)

Bug Fixes

• allow loading JSON from .gz files (#22) (cefd950)
• issues occuring when annotating real data (#28) (0636d49)