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Issues: vatlab/varianttools

53 Open 101 Closed
53 Open 101 Closed
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Issues list

All association tests have failed (Association tests on 324063 groups have completed. 324063 failed)
#151 opened Nov 10, 2020 by marionamujal
2
Association analysis running but remains at 0% for hours
#150 opened Oct 12, 2020 by marionamujal
@BoPeng
4
KING 2.2.4
#148 opened Sep 20, 2020 by Yomiran
1
KING pipeline does not work
#147 opened May 16, 2020 by BoPeng
5
Python 3.8 use spawn as default method to create subprocesses.
#144 opened May 11, 2020 by BoPeng
3
Switch Variant Tools from MD Anderson to a public hosting location (AWS?)
#143 opened May 11, 2020 by BoPeng
Association test with covariate depending on the gene-set
#142 opened Apr 9, 2020 by fabiennejh
4
Fisher exact test pvalue and multiple testing
#139 opened Jan 15, 2020 by freedomq8
9
SKAT errors bug
#138 opened Jan 14, 2020 by BoPeng
6
vtools access to annotation database
#137 opened Dec 18, 2019 by BoPeng
Error when output variants of samples with genotype value as filter criteria
#136 opened Dec 12, 2019 by mullinyu
1
Documentation not viewable on cell phones
#134 opened Nov 6, 2019 by BoPeng
Add a edit in github button to documentation
#124 opened Oct 24, 2019 by BoPeng
gene set based burden test
#119 opened Sep 23, 2019 by qserenali
@gaow
3
database is locked
#117 opened Sep 18, 2019 by qserenali
@jma7
1
limit analysis based on selected region (bed file)
#114 opened Jul 16, 2019 by freedomq8
1
Faster access to HDF5 using vaex
#112 opened Jul 10, 2019 by BoPeng
1
Finding more information on excluded variants
#105 opened May 16, 2019 by BoPeng
@jma7
6
Problem in creating a new annotation database dbNSFP v3_5a for hg19
#104 opened Apr 26, 2019 by mullinyu
13
Cannot add DP to variant fields
#103 opened Apr 16, 2019 by brankovicmarija
@jma7
8
Size of genotype database
#99 opened Mar 22, 2019 by gaow
2
Organization of genotype database
#98 opened Mar 22, 2019 by gaow
@jma7
SKAT errors from the new version
#95 opened Mar 20, 2019 by BoPeng
19
vtools associate qualtitative phenotypes
#91 opened Feb 22, 2019 by fabiennejh
8
Error message too verbose by default
#90 opened Jan 23, 2019 by gaow
@jma7
1
ProTip! Adding no:label will show everything without a label.