Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Name Prefix Must End with Period But Not Documented #6

Closed
DarioS opened this issue Dec 11, 2019 · 1 comment
Closed

Name Prefix Must End with Period But Not Documented #6

DarioS opened this issue Dec 11, 2019 · 1 comment

Comments

@DarioS
Copy link

DarioS commented Dec 11, 2019

For STAR's --outFileNamePrefix, it adds the suffixes directly to the end the prefix without any delimiter. For example, if the prefix is Patient1, the file name of the splice junctions file will be Patient1SJ.out.tab. However, Ularcirc demands that there is a period separating the prefix from the suffix, which is not what STAR does by default.

File must end with either .SJ.out.tab or .ReadsPerGene.out.tab or .Chimeric.out.junction
Please review the following files that failed to upload:
OC1hg38Chimeric.out.junction
OC1hg38SJ.out.tab

Can the period be optional since STAR doesn't use one to separate the prefix from the suffix? In the meantime, I'll work around it by using soft links.
@davhum
Copy link
Collaborator

davhum commented Jan 7, 2020

Good points. have updated so that both naming conventions can be accepted.

@davhum davhum closed this as completed Jan 7, 2020
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@DarioS @davhum