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In previous versions of phylotree.js, a Newick file without lengths was read as a Newick file without length. In the current version of phylotree.js, a Newick file without length is assumed to have a length of 1 at each edge. This is annoying in two ways:
Phylogenies are incorrectly drawn to appear as if the length is 1, which could be misleading.
It makes it harder for phylotree.js to be used in a phylogeny editor (as described in getNewick() returns unquoted Newick strings #438 (comment)), since the Newick produced by a Phylotree instance isn't identical to the Newick passed to it.
Would it be possible to have an option for turning this off?
The text was updated successfully, but these errors were encountered:
gaurav
changed the title
Newick files without distances should not be coerced to distances of 1
Newick files without lengths should not be coerced to distances of 1
Aug 30, 2023
In previous versions of phylotree.js, a Newick file without lengths was read as a Newick file without length. In the current version of phylotree.js, a Newick file without length is assumed to have a length of 1 at each edge. This is annoying in two ways:
Would it be possible to have an option for turning this off?
The text was updated successfully, but these errors were encountered: