Fix issue with merging dependsOn from Workspace Configs (#3866)

The previous bookkeeping markers were not getting set if dependsOn
was set to an empty array. We need to set the marker so we can
tell whether the user intended to overwrite dependsOn from a workspace or not.

cli/integration_tests/composable_config/composing-add-keys.t

@@ -15,13 +15,13 @@ Setup
   \xe2\x80\xa2 Packages in scope: add-keys (esc)
   \xe2\x80\xa2 Running add-keys-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  add-keys:add-keys-underlying-task: cache miss, executing a33d34272db64281
+  add-keys:add-keys-underlying-task: cache miss, executing 78349dfba4d58116
   add-keys:add-keys-underlying-task: 
   add-keys:add-keys-underlying-task: > add-keys-underlying-task
   add-keys:add-keys-underlying-task: > echo "running add-keys-underlying-task"
   add-keys:add-keys-underlying-task: 
   add-keys:add-keys-underlying-task: running add-keys-underlying-task
-  add-keys:add-keys-task: cache miss, executing f4bbaa26e53aac6f
+  add-keys:add-keys-task: cache miss, executing c3b35d8aaef32d5b
   add-keys:add-keys-task: 
   add-keys:add-keys-task: > add-keys-task
   add-keys:add-keys-task: > echo "running add-keys-task" > out/foo.min.txt
@@ -43,13 +43,13 @@ Setup
   \xe2\x80\xa2 Packages in scope: add-keys (esc)
   \xe2\x80\xa2 Running add-keys-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  add-keys:add-keys-underlying-task: cache hit, replaying output a33d34272db64281
+  add-keys:add-keys-underlying-task: cache hit, replaying output 78349dfba4d58116
   add-keys:add-keys-underlying-task: 
   add-keys:add-keys-underlying-task: > add-keys-underlying-task
   add-keys:add-keys-underlying-task: > echo "running add-keys-underlying-task"
   add-keys:add-keys-underlying-task: 
   add-keys:add-keys-underlying-task: running add-keys-underlying-task
-  add-keys:add-keys-task: cache hit, suppressing output f4bbaa26e53aac6f
+  add-keys:add-keys-task: cache hit, suppressing output c3b35d8aaef32d5b
 
    Tasks:    2 successful, 2 total
   Cached:    2 cached, 2 total
@@ -61,13 +61,13 @@ Setup
   \xe2\x80\xa2 Packages in scope: add-keys (esc)
   \xe2\x80\xa2 Running add-keys-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  add-keys:add-keys-underlying-task: cache miss, executing dfc32b367b1c6a9a
+  add-keys:add-keys-underlying-task: cache miss, executing 1626b8684b31ff83
   add-keys:add-keys-underlying-task: 
   add-keys:add-keys-underlying-task: > add-keys-underlying-task
   add-keys:add-keys-underlying-task: > echo "running add-keys-underlying-task"
   add-keys:add-keys-underlying-task: 
   add-keys:add-keys-underlying-task: running add-keys-underlying-task
-  add-keys:add-keys-task: cache miss, executing e0596a25ab3888ea
+  add-keys:add-keys-task: cache miss, executing da7c8429d1c793ba
   add-keys:add-keys-task: 
   add-keys:add-keys-task: > add-keys-task
   add-keys:add-keys-task: > echo "running add-keys-task" > out/foo.min.txt
@@ -82,13 +82,13 @@ Setup
   \xe2\x80\xa2 Packages in scope: add-keys (esc)
   \xe2\x80\xa2 Running add-keys-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  add-keys:add-keys-underlying-task: cache hit, replaying output dfc32b367b1c6a9a
+  add-keys:add-keys-underlying-task: cache hit, replaying output 1626b8684b31ff83
   add-keys:add-keys-underlying-task: 
   add-keys:add-keys-underlying-task: > add-keys-underlying-task
   add-keys:add-keys-underlying-task: > echo "running add-keys-underlying-task"
   add-keys:add-keys-underlying-task: 
   add-keys:add-keys-underlying-task: running add-keys-underlying-task
-  add-keys:add-keys-task: cache miss, executing 2ff6e32f88af5a65
+  add-keys:add-keys-task: cache miss, executing 72e64a10a351980c
   add-keys:add-keys-task: 
   add-keys:add-keys-task: > add-keys-task
   add-keys:add-keys-task: > echo "running add-keys-task" > out/foo.min.txt

cli/integration_tests/composable_config/composing-add-tasks.t

@@ -6,7 +6,7 @@ Setup
   \xe2\x80\xa2 Packages in scope: add-tasks (esc)
   \xe2\x80\xa2 Running added-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  add-tasks:added-task: cache miss, executing 8f82d0bc5ced2f1c
+  add-tasks:added-task: cache miss, executing 301e333fc0e306e9
   add-tasks:added-task: 
   add-tasks:added-task: > added-task
   add-tasks:added-task: > echo "running added-task" > out/foo.min.txt

cli/integration_tests/composable_config/composing-cache.t

@@ -14,7 +14,7 @@ This test covers:
   \xe2\x80\xa2 Packages in scope: cached (esc)
   \xe2\x80\xa2 Running cached-task-1 in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  cached:cached-task-1: cache miss, executing e74036fd7badaaf6
+  cached:cached-task-1: cache miss, executing 26af2215a5ceec12
   cached:cached-task-1: 
   cached:cached-task-1: > cached-task-1
   cached:cached-task-1: > echo 'cached-task-1' > out/foo.min.txt
@@ -39,7 +39,7 @@ This test covers:
   \xe2\x80\xa2 Packages in scope: cached (esc)
   \xe2\x80\xa2 Running cached-task-2 in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  cached:cached-task-2: cache bypass, force executing a98a2c287f1d2763
+  cached:cached-task-2: cache bypass, force executing 90e566e56bf1dc12
   cached:cached-task-2: 
   cached:cached-task-2: > cached-task-2
   cached:cached-task-2: > echo 'cached-task-2' > out/foo.min.txt
@@ -61,7 +61,7 @@ no `cache` config in root, cache:false in workspace
   \xe2\x80\xa2 Packages in scope: cached (esc)
   \xe2\x80\xa2 Running cached-task-3 in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  cached:cached-task-3: cache bypass, force executing 8a426151da6db286
+  cached:cached-task-3: cache bypass, force executing a54ad1f951b3f194
   cached:cached-task-3: 
   cached:cached-task-3: > cached-task-3
   cached:cached-task-3: > echo 'cached-task-3' > out/foo.min.txt
@@ -85,7 +85,7 @@ we already have a workspace that doesn't have a config
   \xe2\x80\xa2 Packages in scope: missing-workspace-config (esc)
   \xe2\x80\xa2 Running cached-task-4 in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  missing-workspace-config:cached-task-4: cache bypass, force executing ecbdd1ee8d9f34a5
+  missing-workspace-config:cached-task-4: cache bypass, force executing b200610f021ed0b8
   missing-workspace-config:cached-task-4: 
   missing-workspace-config:cached-task-4: > cached-task-4
   missing-workspace-config:cached-task-4: > echo 'cached-task-4' > out/foo.min.txt

cli/integration_tests/composable_config/composing-config-change.t

@@ -4,13 +4,13 @@ Setup
 
 # 1. First run, check the hash
   $ ${TURBO} run config-change-task --filter=config-change --dry=json | jq .tasks[0].hash
-  "b17ced7629048d97"
+  "bbd88577648790db"
 
 2. Run again and assert task hash stays the same
   $ ${TURBO} run config-change-task --filter=config-change --dry=json | jq .tasks[0].hash
-  "b17ced7629048d97"
+  "bbd88577648790db"
 
 3. Change turbo.json and assert that hash changes
   $ cp $TARGET_DIR/apps/config-change/turbo-changed.json $TARGET_DIR/apps/config-change/turbo.json
   $ ${TURBO} run config-change-task --filter=config-change --dry=json | jq .tasks[0].hash
-  "6c56b35e06abb856"
+  "f0e74a964afd751f"

cli/integration_tests/composable_config/composing-cross-workspace.t

@@ -5,13 +5,13 @@ Setup
   \xe2\x80\xa2 Packages in scope: cross-workspace (esc)
   \xe2\x80\xa2 Running cross-workspace-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  blank-pkg:cross-workspace-underlying-task: cache miss, executing e1997d6444832f47
+  blank-pkg:cross-workspace-underlying-task: cache miss, executing 8489d29bbcbbad66
   blank-pkg:cross-workspace-underlying-task: 
   blank-pkg:cross-workspace-underlying-task: > cross-workspace-underlying-task
   blank-pkg:cross-workspace-underlying-task: > echo "cross-workspace-underlying-task from blank-pkg"
   blank-pkg:cross-workspace-underlying-task: 
   blank-pkg:cross-workspace-underlying-task: cross-workspace-underlying-task from blank-pkg
-  cross-workspace:cross-workspace-task: cache miss, executing 6fd8bbb8fdb12e2e
+  cross-workspace:cross-workspace-task: cache miss, executing b5f0e030cae7046a
   cross-workspace:cross-workspace-task: 
   cross-workspace:cross-workspace-task: > cross-workspace-task
   cross-workspace:cross-workspace-task: > echo "cross-workspace-task"

cli/integration_tests/composable_config/composing-missing-workspace-config-deps.t

@@ -16,22 +16,22 @@ Setup
   \xe2\x80\xa2 Remote caching disabled (esc)
 
   $ cat tmp.log | grep "missing-workspace-config:missing-workspace-config-task-with-deps"
-  missing-workspace-config:missing-workspace-config-task-with-deps: cache miss, executing 35e5f5b0b58468a8
+  missing-workspace-config:missing-workspace-config-task-with-deps: cache miss, executing 663ecc932e855517
   missing-workspace-config:missing-workspace-config-task-with-deps: 
   missing-workspace-config:missing-workspace-config-task-with-deps: > missing-workspace-config-task-with-deps
   missing-workspace-config:missing-workspace-config-task-with-deps: > echo "running missing-workspace-config-task-with-deps" > out/foo.min.txt
   missing-workspace-config:missing-workspace-config-task-with-deps: 
 
   $ cat tmp.log | grep "missing-workspace-config:missing-workspace-config-underlying-task"
-  missing-workspace-config:missing-workspace-config-underlying-task: cache miss, executing 73dd0ecdcdc4a3f4
+  missing-workspace-config:missing-workspace-config-underlying-task: cache miss, executing f5b6890c769fbfc0
   missing-workspace-config:missing-workspace-config-underlying-task: 
   missing-workspace-config:missing-workspace-config-underlying-task: > missing-workspace-config-underlying-task
   missing-workspace-config:missing-workspace-config-underlying-task: > echo "running missing-workspace-config-underlying-task"
   missing-workspace-config:missing-workspace-config-underlying-task: 
   missing-workspace-config:missing-workspace-config-underlying-task: running missing-workspace-config-underlying-task
 
   $ cat tmp.log | grep "blank-pkg:missing-workspace-config-underlying-topo-task"
-  blank-pkg:missing-workspace-config-underlying-topo-task: cache miss, executing 7a03890dc4926724
+  blank-pkg:missing-workspace-config-underlying-topo-task: cache miss, executing 9ed2e168d7105985
   blank-pkg:missing-workspace-config-underlying-topo-task: 
   blank-pkg:missing-workspace-config-underlying-topo-task: > missing-workspace-config-underlying-topo-task
   blank-pkg:missing-workspace-config-underlying-topo-task: > echo "missing-workspace-config-underlying-topo-task from blank-pkg"

cli/integration_tests/composable_config/composing-missing-workspace-config.t

@@ -12,7 +12,7 @@ Setup
   \xe2\x80\xa2 Packages in scope: missing-workspace-config (esc)
   \xe2\x80\xa2 Running missing-workspace-config-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  missing-workspace-config:missing-workspace-config-task: cache miss, executing b4851e92e758d2a8
+  missing-workspace-config:missing-workspace-config-task: cache miss, executing 05c61aea3d614094
   missing-workspace-config:missing-workspace-config-task: 
   missing-workspace-config:missing-workspace-config-task: > missing-workspace-config-task
   missing-workspace-config:missing-workspace-config-task: > echo "running missing-workspace-config-task" > out/foo.min.txt
@@ -34,7 +34,7 @@ Setup
   \xe2\x80\xa2 Packages in scope: missing-workspace-config (esc)
   \xe2\x80\xa2 Running missing-workspace-config-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  missing-workspace-config:missing-workspace-config-task: cache hit, suppressing output b4851e92e758d2a8
+  missing-workspace-config:missing-workspace-config-task: cache hit, suppressing output 05c61aea3d614094
 
    Tasks:    1 successful, 1 total
   Cached:    1 cached, 1 total
@@ -46,7 +46,7 @@ Setup
   \xe2\x80\xa2 Packages in scope: missing-workspace-config (esc)
   \xe2\x80\xa2 Running missing-workspace-config-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  missing-workspace-config:missing-workspace-config-task: cache miss, executing 1ca45c09eccb3931
+  missing-workspace-config:missing-workspace-config-task: cache miss, executing 95c3172b0e76df0c
   missing-workspace-config:missing-workspace-config-task: 
   missing-workspace-config:missing-workspace-config-task: > missing-workspace-config-task
   missing-workspace-config:missing-workspace-config-task: > echo "running missing-workspace-config-task" > out/foo.min.txt
@@ -63,7 +63,7 @@ Setup
   \xe2\x80\xa2 Packages in scope: missing-workspace-config (esc)
   \xe2\x80\xa2 Running missing-workspace-config-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  missing-workspace-config:missing-workspace-config-task: cache hit, suppressing output 1ca45c09eccb3931
+  missing-workspace-config:missing-workspace-config-task: cache hit, suppressing output 95c3172b0e76df0c
 
    Tasks:    1 successful, 1 total
   Cached:    1 cached, 1 total
@@ -74,7 +74,7 @@ Setup
   \xe2\x80\xa2 Packages in scope: missing-workspace-config (esc)
   \xe2\x80\xa2 Running missing-workspace-config-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  missing-workspace-config:missing-workspace-config-task: cache miss, executing 06fd150c6e5e8a1b
+  missing-workspace-config:missing-workspace-config-task: cache miss, executing dae96fa19e30c806
   missing-workspace-config:missing-workspace-config-task: 
   missing-workspace-config:missing-workspace-config-task: > missing-workspace-config-task
   missing-workspace-config:missing-workspace-config-task: > echo "running missing-workspace-config-task" > out/foo.min.txt
@@ -90,7 +90,7 @@ Setup
   \xe2\x80\xa2 Packages in scope: missing-workspace-config (esc)
   \xe2\x80\xa2 Running cached-task-4 in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  missing-workspace-config:cached-task-4: cache bypass, force executing aaa8d1d189163b4c
+  missing-workspace-config:cached-task-4: cache bypass, force executing 90119c5212ddbefe
   missing-workspace-config:cached-task-4: 
   missing-workspace-config:cached-task-4: > cached-task-4
   missing-workspace-config:cached-task-4: > echo 'cached-task-4' > out/foo.min.txt

cli/integration_tests/composable_config/composing-omit-keys-deps.t

@@ -16,22 +16,22 @@ Setup
   \xe2\x80\xa2 Running omit-keys-task-with-deps in 1 packages (esc)
 
   $ cat tmp.log | grep "omit-keys:omit-keys-task-with-deps"
-  omit-keys:omit-keys-task-with-deps: cache miss, executing 5a57686e181e021a
+  omit-keys:omit-keys-task-with-deps: cache miss, executing 2964125aa804147b
   omit-keys:omit-keys-task-with-deps: 
   omit-keys:omit-keys-task-with-deps: > omit-keys-task-with-deps
   omit-keys:omit-keys-task-with-deps: > echo "running omit-keys-task-with-deps" > out/foo.min.txt
   omit-keys:omit-keys-task-with-deps: 
 
   $ cat tmp.log | grep "omit-keys:omit-keys-underlying-task"
-  omit-keys:omit-keys-underlying-task: cache miss, executing a16948b5c74ccef9
+  omit-keys:omit-keys-underlying-task: cache miss, executing bd4cb773a11bcef0
   omit-keys:omit-keys-underlying-task: 
   omit-keys:omit-keys-underlying-task: > omit-keys-underlying-task
   omit-keys:omit-keys-underlying-task: > echo "running omit-keys-underlying-task"
   omit-keys:omit-keys-underlying-task: 
   omit-keys:omit-keys-underlying-task: running omit-keys-underlying-task
 
   $ cat tmp.log | grep "blank-pkg:omit-keys-underlying-topo-task"
-  blank-pkg:omit-keys-underlying-topo-task: cache miss, executing ea682b492b632165
+  blank-pkg:omit-keys-underlying-topo-task: cache miss, executing 3f55273c022aa041
   blank-pkg:omit-keys-underlying-topo-task: 
   blank-pkg:omit-keys-underlying-topo-task: > omit-keys-underlying-topo-task
   blank-pkg:omit-keys-underlying-topo-task: > echo "omit-keys-underlying-topo-task from blank-pkg"

cli/integration_tests/composable_config/composing-omit-keys.t

@@ -15,7 +15,7 @@ Setup
   \xe2\x80\xa2 Packages in scope: omit-keys (esc)
   \xe2\x80\xa2 Running omit-keys-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  omit-keys:omit-keys-task: cache miss, executing a2c5f2a3a6b20d6e
+  omit-keys:omit-keys-task: cache miss, executing 2fe73e4bc4e0f517
   omit-keys:omit-keys-task: 
   omit-keys:omit-keys-task: > omit-keys-task
   omit-keys:omit-keys-task: > echo "running omit-keys-task" > out/foo.min.txt
@@ -37,7 +37,7 @@ Setup
   \xe2\x80\xa2 Packages in scope: omit-keys (esc)
   \xe2\x80\xa2 Running omit-keys-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  omit-keys:omit-keys-task: cache hit, suppressing output a2c5f2a3a6b20d6e
+  omit-keys:omit-keys-task: cache hit, suppressing output 2fe73e4bc4e0f517
 
    Tasks:    1 successful, 1 total
   Cached:    1 cached, 1 total
@@ -49,7 +49,7 @@ Setup
   \xe2\x80\xa2 Packages in scope: omit-keys (esc)
   \xe2\x80\xa2 Running omit-keys-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  omit-keys:omit-keys-task: cache miss, executing b8b6909ecb130e0f
+  omit-keys:omit-keys-task: cache miss, executing 5039bd112be78dca
   omit-keys:omit-keys-task: 
   omit-keys:omit-keys-task: > omit-keys-task
   omit-keys:omit-keys-task: > echo "running omit-keys-task" > out/foo.min.txt
@@ -66,7 +66,7 @@ Setup
   \xe2\x80\xa2 Packages in scope: omit-keys (esc)
   \xe2\x80\xa2 Running omit-keys-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  omit-keys:omit-keys-task: cache hit, suppressing output b8b6909ecb130e0f
+  omit-keys:omit-keys-task: cache hit, suppressing output 5039bd112be78dca
 
    Tasks:    1 successful, 1 total
   Cached:    1 cached, 1 total
@@ -77,7 +77,7 @@ Setup
   \xe2\x80\xa2 Packages in scope: omit-keys (esc)
   \xe2\x80\xa2 Running omit-keys-task in 1 packages (esc)
   \xe2\x80\xa2 Remote caching disabled (esc)
-  omit-keys:omit-keys-task: cache miss, executing bb73a08ebe0a4ed6
+  omit-keys:omit-keys-task: cache miss, executing e14f331c81bc375b
   omit-keys:omit-keys-task: 
   omit-keys:omit-keys-task: > omit-keys-task
   omit-keys:omit-keys-task: > echo "running omit-keys-task" > out/foo.min.txt