-
Notifications
You must be signed in to change notification settings - Fork 0
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
IntegrateData() fails: Error in validityMethod(as(object, superClass)) #4
Comments
Relevant issues:
|
Suggestions
|
|
Hi, I am facing the same problem, my dataset is around 122k cells from 32 samples. Both methods fail (CCA and rPCA) when it comes to integratedata() step. I tried as low as 1k variable features but it's not working. How did you get rPCA method to work? Note: both methods work fine when integrating using the previous normalization methods (log2 norm) |
Hey @vertesy , how did you get rPCA to run with SCT normalization? I've been struggling with this for weeks now, would infinitely appreciate any input |
pipe broke overnight after this, so cannot see warnings().
The text was updated successfully, but these errors were encountered: