makeFeatureMatrix is not in the package

[emdann]

Hi, I am trying to preprocess scATAC data to gene level features as described in the scATAC + scRNA-seq vignette, but the function makeFeatureMatrix is not exported from the NAMESPACE.

[vkozareva]

Hello! Have you made sure to install the latest version of the package? We only recently added this functionality. Also this function appears in the RcppExports.R file instead of the NAMESPACE.

[arutik]

Hi,

Just to let you know: I also experience this even after installing with install_github('MacoskoLab/liger')

Sincerely,
Anna Arutyunyan

[vkozareva]

It appears that on some systems (perhaps due to the R version), R might not readily recognize package functions which are only exported by RcppExports. We'll add a NAMESPACE exported version of this function, but in the meantime, you should be able to access the functionality by using liger:::makeFeatureMatrix. Sorry about that!

[ankushs0128]

makeFeaturematrix not available any of the two functionality

gene.counts <- liger:::makeFeatureMatrix(genes.bc, barcodes)
Error in get(name, envir = asNamespace(pkg), inherits = FALSE) :
object 'makeFeatureMatrix' not found