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Cant download souporcell singularity image #193

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eandresleon opened this issue Jul 14, 2023 · 1 comment
Closed

Cant download souporcell singularity image #193

eandresleon opened this issue Jul 14, 2023 · 1 comment

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@eandresleon
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I'm trying to download the singularity image, but I obtain the following:

user@host# singularity pull shub://wheaton5/souporcell
FATAL: While pulling shub image: error fetching image to cache: failed to get manifest for: shub://wheaton5/souporcell: 503 Service Unavailable

user@host# singularity pull shub://wheaton5/souporcell:latest
FATAL: While pulling shub image: error fetching image to cache: failed to get manifest for: shub://wheaton5/souporcell:latest: 503 Service Unavailable

Any help ?

@eandresleon eandresleon changed the title Cant download souporcell Cant download souporcell singularity image Jul 14, 2023
@eandresleon
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eandresleon commented Jul 14, 2023

It is answered in the release 2.5:

New singularity build that supports hisat2 and updates multiple software used such as minimap2 and pystan. Singularity hub is now defunct, so I have to host this on my google docs.

wget --load-cookies /tmp/cookies.txt "https://docs.google.com/uc?export=download&confirm=$(wget --quiet --save-cookies /tmp/cookies.txt --keep-session-cookies --no-check-certificate 'https://drive.google.com/file/d/1_KIevXI1MvkoXtuiMFv8amlWlC0hTP7p' -O- | sed -rn 's/.*confirm=([0-9A-Za-z_]+).*/\1\n/p')&id=1_KIevXI1MvkoXtuiMFv8amlWlC0hTP7p" -O souporcell2.5.sif && rm -rf /tmp/cookies.txt

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