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## v0.9.0 | ||
* Appraise can now generate 'appraisal plots' | ||
* Use of smafa / SQLite rather than BLAST+ / VSEARCH for 'query' and clustering. SingleM | ||
databases (.sdb) will need to be regenerated. | ||
* SingleM databases can now be queried via taxonomy or sample name | ||
* Overhaul of command line help messages | ||
* Appraise can now appraise assemblies as well as genomes | ||
* Various bug fixes and enhancements | ||
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## v0.8.2 | ||
* Fix for installation through PyPI. | ||
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## v0.8.1 | ||
* Fix bug in singlem query where some results were omitted. | ||
* Detect when max_target_seqs has been reached in singlem query. | ||
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## v0.8.0 | ||
* Overhauled makedb/query. Database creation is now faster and querying more accurate, especially for OTUs with gaps. Old databases should be re-generated. | ||
* summarise: Added BIOM and wide format outputs - props to Steve Robbins and Louis Monaghan for the suggestions. | ||
* appraise: Default to genus-level similarity cutoff. | ||
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## v0.7.1 | ||
* Now installable via pip / PyPI. | ||
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## v0.7.0 | ||
* Speed improvements for singlem query | ||
* Memory improvements for singlem makedb | ||
* db: Use and require the new diamond version / database format | ||
* summarise: Only output to a single html for --krona where possible | ||
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