LICENSE.txt

BrainSuite Source Code Copyright Notice

THANK YOU FOR YOUR INTEREST IN BRAINSUITE. PLEASE NOTE THAT ALTHOUGH THIS IS A
JOINT PROJECT OF UCLA AND USC, THE SOFTWARE FILES/PROGRAMS/MODULES ARE NOT ALL
JOINTLY COPYRIGHTED. PLEASE CHECK EACH INDIVIDUAL FILE/PROGRAM/MODULE
FOR MORE DETAILS.

The following copyright notices apply to the programs and libraries built as part
of this distribution. Additional third party software is included in the directory
3rdParty, and is used under open source licenses or is in the public domain. For
details, please read the ThirdPartyLicenses.txt document.

Licensing
------------------------------
BrainSuite16a1
Copyright (C) 2016 The Regents of the University of California
Authored by David W. Shattuck

For more information, contact: support@brainsuite.org or
    David Shattuck
    Department of Neurology
    David Geffen School of Medicine at UCLA
    635 Charles E. Young Drive South, Suite 225
    Los Angeles, CA 90095-7334

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------
bfc v.16a1 Bias Field Corrector
Copyright (C) 2016 The Regents of the University of California and the University of Southern California
Authored by David W. Shattuck

For more information, contact: support@brainsuite.org or
    David Shattuck
    Department of Neurology
    David Geffen School of Medicine at UCLA
    635 Charles E. Young Drive South, Suite 225
    Los Angeles, CA 90095-7334

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------

bse v.16a1 Brain Surface Extractor
Copyright (C) 2016 The Regents of the University of California and the University of Southern California
Authored by David W. Shattuck

For more information, contact: support@brainsuite.org or
    David Shattuck
    Department of Neurology
    David Geffen School of Medicine at UCLA
    635 Charles E. Young Drive South, Suite 225
    Los Angeles, CA 90095-7334

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------
cortex v.16a1
Copyright (C) 2016 The Regents of the University of California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

For more information, contact: support@brainsuite.org or
    David Shattuck
    Department of Neurology
    David Geffen School of Medicine at UCLA
    635 Charles E. Young Drive South, Suite 225
    Los Angeles, CA 90095-7334

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------
dewisp v.16a1
Copyright (C) 2016 The Regents of the University of California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

For more information, contact: support@brainsuite.org or
    David Shattuck
    Department of Neurology
    David Geffen School of Medicine at UCLA
    635 Charles E. Young Drive South, Suite 225
    Los Angeles, CA 90095-7334

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------
dfs v.16a1
Copyright (C) 2016 The Regents of the University of California and the University of Southern California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

For more information, contact: support@brainsuite.org or
    David Shattuck
    Department of Neurology
    David Geffen School of Medicine at UCLA
    635 Charles E. Young Drive South, Suite 225
    Los Angeles, CA 90095-7334

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------
hemisplit v.16a1
Copyright (C) 2016 The Regents of the University of California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

For more information, contact: support@brainsuite.org or
    David Shattuck
    Department of Neurology
    David Geffen School of Medicine at UCLA
    635 Charles E. Young Drive South, Suite 225
    Los Angeles, CA 90095-7334

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------
pialmesh v.16a1
Copyright (C) 2016 The Regents of the University of California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

For more information, contact: support@brainsuite.org or
    David Shattuck
    Department of Neurology
    David Geffen School of Medicine at UCLA
    635 Charles E. Young Drive South, Suite 225
    Los Angeles, CA 90095-7334

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------
pvc v.16a1 Partial Volume Classifier
Copyright (C) 2016 The Regents of the University of California and the University of Southern California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

For more information, contact: support@brainsuite.org or
    David Shattuck
    Department of Neurology
    David Geffen School of Medicine at UCLA
    635 Charles E. Young Drive South, Suite 225
    Los Angeles, CA 90095-7334

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------
scrubmask v.16a1
Copyright (C) 2016 The Regents of the University of California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

For more information, contact: support@brainsuite.org or
    David Shattuck
    Department of Neurology
    David Geffen School of Medicine at UCLA
    635 Charles E. Young Drive South, Suite 225
    Los Angeles, CA 90095-7334

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------
skullfinder v.16a1
Copyright (C) 2016 The Regents of the University of California and the University of Southern California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

For more information, contact: support@brainsuite.org or
    David Shattuck
    Department of Neurology
    David Geffen School of Medicine at UCLA
    635 Charles E. Young Drive South, Suite 225
    Los Angeles, CA 90095-7334

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------
tca v.16a1
Copyright (C) 2016 The Regents of the University of California and the University of Southern California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

For more information, contact: support@brainsuite.org or
    David Shattuck
    Department of Neurology
    David Geffen School of Medicine at UCLA
    635 Charles E. Young Drive South, Suite 225
    Los Angeles, CA 90095-7334

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------
odfmax v.16a1
Copyright (C) 2016 The Regents of the University of California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------

htrack v.16a1
Copyright (C) 2016 The Regents of the University of California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------

conmat v.16a1
Copyright (C) 2016 The Regents of the University of California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------

dwisplit v.16a1
Copyright (C) 2016 The Regents of the University of California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

------------------------------

Vol3D v.16a1 3D Image Volume Library
Copyright (C) 2016 The Regents of the University of California and the University of Southern California
Authored by David W. Shattuck, Ahmanson-Lovelace Brain Mapping Center
Dept. of Neurology, David Geffen School of Medicine, UCLA.

For more information, contact: support@brainsuite.org or
    David Shattuck
    Department of Neurology
    David Geffen School of Medicine at UCLA
    635 Charles E. Young Drive South, Suite 225
    Los Angeles, CA 90095-7334

Vol3D is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2.

Vol3D is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
________________________________________________________________________________

cerebrohelper.cpp and cerebrohelperparser.h are released under the following
license.

Copyright (c) 2016 The Regents of the University of California
Authored by David W. Shattuck
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

1. Redistributions of source code must retain the above copyright notice,
   this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
   this list of conditions and the following disclaimer in the documentation
   and/or other materials provided with the distribution.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.

________________________________________________________________________________

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                       Version 2, June 1991

 Copyright (C) 1989, 1991 Free Software Foundation, Inc.,
 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
 Everyone is permitted to copy and distribute verbatim copies
 of this license document, but changing it is not allowed.

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  0. This License applies to any program or other work which contains
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of promoting the sharing and reuse of software generally.

                            NO WARRANTY

  11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.  EXCEPT WHEN
OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.  THE ENTIRE RISK AS
TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU.  SHOULD THE
PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
REPAIR OR CORRECTION.

  12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
POSSIBILITY OF SUCH DAMAGES.

                     END OF TERMS AND CONDITIONS

            How to Apply These Terms to Your New Programs

  If you develop a new program, and you want it to be of the greatest
possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.

  To do so, attach the following notices to the program.  It is safest
to attach them to the start of each source file to most effectively
convey the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.

    <one line to give the program's name and a brief idea of what it does.>
    Copyright (C) <year>  <name of author>

    This program is free software; you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation; either version 2 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License along
    with this program; if not, write to the Free Software Foundation, Inc.,
    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.

Also add information on how to contact you by electronic and paper mail.

If the program is interactive, make it output a short notice like this
when it starts in an interactive mode:

    Gnomovision version 69, Copyright (C) year name of author
    Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
    This is free software, and you are welcome to redistribute it
    under certain conditions; type `show c' for details.

The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License.  Of course, the commands you use may
be called something other than `show w' and `show c'; they could even be
mouse-clicks or menu items--whatever suits your program.

You should also get your employer (if you work as a programmer) or your
school, if any, to sign a "copyright disclaimer" for the program, if
necessary.  Here is a sample; alter the names:

  Yoyodyne, Inc., hereby disclaims all copyright interest in the program
  `Gnomovision' (which makes passes at compilers) written by James Hacker.

  <signature of Ty Coon>, 1 April 1989
  Ty Coon, President of Vice

This General Public License does not permit incorporating your program into
proprietary programs.  If your program is a subroutine library, you may
consider it more useful to permit linking proprietary applications with the
library.  If this is what you want to do, use the GNU Lesser General
Public License instead of this License.