DESCRIPTION

Package: oncoscanR
Type: Package
Title: Secondary analyses of CNV data (HRD and more)
Version: 1.7.2
Authors@R: c(person("Yann", "Christinat", email = "yann.christinat@hcuge.ch", 
                  role = c("aut", "cre")),
             person("Geneva University Hospitals", role=c("aut", "cph")))
Description: The software uses the copy number segments from a text file and 
    identifies all chromosome arms that are globally altered and computes various 
    genome-wide scores. The following HRD scores (characteristic of BRCA-mutated cancers) 
    are included: LST, HR-LOH, nLST and gLOH. the package is tailored for the 
    ThermoFisher Oncoscan assay analyzed with their Chromosome Alteration Suite 
    (ChAS) but can be adapted to any input.
License: MIT + file LICENSE
Date: 2022-06-14
Encoding: UTF-8
VignetteBuilder: knitr
biocViews:
    CopyNumberVariation,
    Microarray,
    Software
Imports:
    readr,
  	S4Vectors,
  	methods,
  	utils
RoxygenNote: 7.3.2
Depends:
    R (>= 4.2),
    IRanges (>= 2.30.0),
    GenomicRanges (>= 1.48.0),
    magrittr
Suggests: 
    testthat (>= 3.1.4),
    jsonlite,
    knitr,
    rmarkdown,
    BiocStyle
URL: https://github.com/yannchristinat/oncoscanR
BugReports:
    https://github.com/yannchristinat/oncoscanR/issues
LazyData: true