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added SGE array support #1

Merged
merged 0 commits into from
Sep 16, 2011
Merged

added SGE array support #1

merged 0 commits into from
Sep 16, 2011

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mlovci
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@mlovci mlovci commented Jul 14, 2011

my cluster limits the number of jobs I can submit, using array jobs gets around this requirement and maybe it will help other people who face the same problem. These changes also consolidate all the error messages so there aren't many many files produced by the cluster. The previous version of --use-cluster is still supported, I've added an "--SGEarray" option to be used in conjunction with "--use-cluster". Array job names can be designated with the "--job-name" option for queue control purposes.

@mlovci mlovci merged commit d0c44a0 into yarden:master Sep 16, 2011
yarden added a commit that referenced this pull request Oct 14, 2012
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