maanova.install

[Yikun]

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL maanova
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘maanova’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -c makeratio.c -o makeratio.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -c masvd.c -o masvd.o
In file included from /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:40,
                 from masvd.h:1,
                 from masvd.c:17:
masvd.h:14:15: error: conflicting types for ‘dgesvd_’; have ‘void(const char *, const char *, const int *, const int *, double *, const int *, double *, double *, const int *, double *, const int *, double *, const int *, int *)’
   14 | void F77_NAME(dgesvd)(const char *jobu, const char *jobvt,
      |               ^~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
   77 | # define F77_CALL(x)    x ## _
      |                         ^
masvd.h:14:6: note: in expansion of macro ‘F77_NAME’
   14 | void F77_NAME(dgesvd)(const char *jobu, const char *jobvt,
      |      ^~~~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:348:10: note: previous declaration of ‘dgesvd_’ with type ‘void(const char *, const char *, const int *, const int *, double *, const int *, double *, double *, const int *, double *, const int *, double *, const int *, int *, size_t,  size_t)’ {aka ‘void(const char *, const char *, const int *, const int *, double *, const int *, double *, double *, const int *, double *, const int *, double *, const int *, int *, long unsigned int,  long unsigned int)’}
  348 | F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m,
      |          ^~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
   77 | # define F77_CALL(x)    x ## _
      |                         ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:348:1: note: in expansion of macro ‘F77_NAME’
  348 | F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m,
      | ^~~~~~~~
masvd.c: In function ‘masvd’:
masvd.c:68:18: error: too few arguments to function ‘dgesdd_’
   68 |         F77_CALL(dgesdd)(CHAR(STRING_ELT(jobu, 0)),
      |                  ^~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
   77 | # define F77_CALL(x)    x ## _
      |                         ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:2397:10: note: declared here
 2397 | F77_NAME(dgesdd)(const char* jobz,
      |          ^~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
   77 | # define F77_CALL(x)    x ## _
      |                         ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:2397:1: note: in expansion of macro ‘F77_NAME’
 2397 | F77_NAME(dgesdd)(const char* jobz,
      | ^~~~~~~~
masvd.c:77:18: error: too few arguments to function ‘dgesdd_’
   77 |         F77_CALL(dgesdd)(CHAR(STRING_ELT(jobu, 0)),
      |                  ^~~~~~
masvd.c:77:9: note: in expansion of macro ‘F77_CALL’
   77 |         F77_CALL(dgesdd)(CHAR(STRING_ELT(jobu, 0)),
      |         ^~~~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:2397:10: note: declared here
 2397 | F77_NAME(dgesdd)(const char* jobz,
      |          ^~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
   77 | # define F77_CALL(x)    x ## _
      |                         ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:2397:1: note: in expansion of macro ‘F77_NAME’
 2397 | F77_NAME(dgesdd)(const char* jobz,
      | ^~~~~~~~
masvd.c: At top level:
masvd.c:114:9: warning: "/*" within comment [-Wcomment]
  114 |         /* work on a copy of x */
      |          
masvd.c:154:1: warning: "/*" within comment [-Wcomment]
  154 | /*#ifndef IEEE_754
      |  
masvd.c:161:5: warning: "/*" within comment [-Wcomment]
  161 |     /* work on a copy of x */
      |      
masvd.c:165:9: warning: "/*" within comment [-Wcomment]
  165 |         /* ask for optimal size of work array */
      |          
masvd.c:189:9: warning: "/*" within comment [-Wcomment]
  189 |         /* ask for optimal size of work array */
      |          
make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:191: masvd.o] Error 1
ERROR: compilation failed for package ‘maanova’
* removing ‘/home/biocbuild/bbs-3.17-bioc/R/library/maanova’

[martin-g]

Fails the same way on x86_64: https://bioconductor.org/checkResults/3.17/bioc-LATEST/maanova/nebbiolo1-buildsrc.html

[martin-g]

Package maanova has been deprecated in 3.17 and removed in 3.18