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TileDBArray.build #59

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martin-g opened this issue Mar 10, 2023 · 2 comments
Open

TileDBArray.build #59

martin-g opened this issue Mar 10, 2023 · 2 comments

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@martin-g
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https://yikun.github.io/bioconductor-0301/report/TileDBArray/kunpeng1-buildsrc.html

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TileDBArray
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* checking for file ‘TileDBArray/DESCRIPTION’ ... OK
* preparing ‘TileDBArray’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘userguide.Rmd’ using rmarkdown
Quitting from lines 35-38 (userguide.Rmd) 
Error: processing vignette 'userguide.Rmd' failed with diagnostics:
Expecting an external pointer: [type=NULL].
--- failed re-building ‘userguide.Rmd’

SUMMARY: processing the following file failed:
  ‘userguide.Rmd’

Error: Vignette re-building failed.
Execution halted
@martin-g
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Reported upstream with: LTLA/TileDBArray#25

@martin-g
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There is no TileDB OS package in openEuler 22.03 LTS, so I built it from source, then installed the R-package for tiledb and finally R CMD ... TileDBArray.
The next report must pass!

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