added else case in get_input_hlatyping_PE rule for input reads when p…

…reprocessing is deactivated
ylab-hi · Jun 19, 2024 · c485fcd · c485fcd
1 parent 97eaae2
commit c485fcd
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
@@ -187,6 +187,13 @@ def get_input_hlatyping_PE(wildcards):
                  pair=["R1","R2"])
           )
     )
+  else:
+    return dict(
+        zip(
+          ["fwd", "rev"],
+          config["data"][f"{wildcards.seqtype}"][wildcards.group]
+        )
+    )
 
 
 def aggregate_mhcI_SE(wildcards):