do you accept/add more dataset to the viewer?

[YubinXie]

Thanks for this super useful dataset/viewer. I was wondering if you will add more data to the dataset in the future or accept submission to the dataset. Thanks!

[yuanzhiyuan]

Thank you for your attention! At present, SODB has not implemented the function of data uploading. If you have any data you would like to share, you can send it to me via email or cloud storage. We will perform subsequent quality control and upload operations.

[YubinXie]

Hi Zhiyuan, that sounds great. here is our paper:
https://pubmed.ncbi.nlm.nih.gov/34653364/

the metadata and raw image:
https://drive.google.com/file/d/1Gr3rGcxyrOtlv2WXHPDVw983FIp3oR8o/view?usp=sharing
https://drive.google.com/file/d/1C3ox9EZQdMxYeiXauBTHwSKL-MDXMNXX/view?usp=sharing

you can also download them in the HTAN database:
https://humantumoratlas.org/explore?selectedFilters=%5B%7B%22group%22%3A%22assayName%22%2C%22value%22%3A%22MIBI%22%7D%2C%7B%22value%22%3A%22HTAN+MSK%22%2C%22label%22%3A%22HTAN+MSK%22%2C%22group%22%3A%22AtlasName%22%2C%22count%22%3A58%2C%22isSelected%22%3Afalse%7D%5D&tab=file#

[yuanzhiyuan]

Hello Yubin,

Due to the high demand for data uploading we have to process, can you send the spatial data in h5ad format through a Google Drive link or another cloud storage service like BaiduYun? Please ensure that each slice is in h5ad format, with adata.X representing the expression matrix and adata.obsm['spatial'] as the spatial coordinate matrix. Additionally, please include any necessary metadata, such as cell type annotation, stored in adata.obs.

To share the data via Google Drive, follow these steps:

Log in to your Google account and go to Google Drive (drive.google.com).
Upload the h5ad files and any additional metadata files to your Google Drive.
Right-click on each file and select "Share."
In the "Share with people and groups" window, click "Change" under "Get link."
Select the option "Anyone with the link" and set the permissions to "Viewer."
Click "Copy link" and share the link with the recipient.
Alternatively, you can use BaiduYun or another cloud storage service by following their specific instructions for uploading and sharing files.

Let me know if you need any further assistance.

[YubinXie]

sounds good. I will work on it!