fMRI_DTI_processing_pipelines

fMRI data processing pipelines

Components

fMRI pre-processing pipeline

• skull strip
• motion correction
• registration
• segmentation
• normalization

DTI processing pipeline

• normalization
• DIPY fiber tracking
• FDT tracktography pipeline

dependencies

• nipype, https://github.com/nipy/nipype
• spm12, https://www.fil.ion.ucl.ac.uk/spm/software/spm12/
• fsl, https://fsl.fmrib.ox.ac.uk/fsl/fslwiki
• afni
• DIPY

reference

• spm12 manual
• FuNP, https://www.frontiersin.org/articles/10.3389/fninf.2019.00005/full
• Density map, https://dipy.org/documentation/1.0.0./examples_built/streamline_tools/

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GAN_for_Stroke_Detection

Decription

• Generative Adversarial Network for Stroke Detection
• Unsupervised Learning Approach

Models' Structure

• Convolutional Autoencoder as Generator, with ResNet structure
• ResNet classifier as Discriminator

Dataset(s)

• Train on Healthy data
• Flanker task, with Referece
  Kelly, A.M., Uddin, L.Q., Biswal, B.B., Castellanos, F.X., Milham, M.P. (2008). Competition between functional brain networks mediates behavioral variability. Neuroimage, 39(1):527-37