setup.py issue #38
Comments
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@xiaoxuetulws Hi, try to reinstall the pytorch according to the cuda version in your server by conda. The cuda version (cudatoolkit) for pytorch should be the same as nvcc -V. ( setup problems are mainly caused by the mismatching of cuda version). Reference Issue: #13 |
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@yuxumin But my CUDA is 10.1, and my CudatoolKit is also 10.1.I downloaded it according to this command on the official website(conda install pytorch==1.7.1 torchvision==0.8.2 torchaudio==0.7.2 cudatoolkit=10.1 -c pytorch) |
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Yes, i see. It seems that the problem is related to C++ and gcc.
It seems a bug for cuda 10.1 (https://forums.developer.nvidia.com/t/cuda-10-1-nvidia-youre-now-fixing-gcc-bugs-that-gcc-doesnt-even-have/71063, pytorch/vision#1893) , but i am not that sure. Could you take a try on other cuda version? (CUDA 10.2 for example) |
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@yuxumin Thank you. I'll try it on |
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Close it since no response. Feel free to re-open it if problems still exist |
Hi, Thanks for your great paper and code, I bnefit a lot.
But when I run python setup.py install --user manually under each dependency directory ,some errors occur:
running install
/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
setuptools.SetuptoolsDeprecationWarning,
/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/command/easy_install.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools.
EasyInstallDeprecationWarning,
running bdist_egg
running egg_info
writing chamfer.egg-info/PKG-INFO
writing dependency_links to chamfer.egg-info/dependency_links.txt
writing top-level names to chamfer.egg-info/top_level.txt
reading manifest file 'chamfer.egg-info/SOURCES.txt'
writing manifest file 'chamfer.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_ext
building 'chamfer' extension
Emitting ninja build file /home/zhang/lws/PoinTr-master/extensions/chamfer_dist/build/temp.linux-x86_64-3.7/build.ninja...
Compiling objects...
Allowing ninja to set a default number of workers... (overridable by setting the environment variable MAX_JOBS=N)
ninja: warning: bad deps log signature or version; starting over
[1/2] c++ -MMD -MF /home/zhang/lws/PoinTr-master/extensions/chamfer_dist/build/temp.linux-x86_64-3.7/chamfer_cuda.o.d -pthread -B /home/zhang/anaconda3/envs/lws/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include -I/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/TH -I/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.1/include -I/home/zhang/anaconda3/envs/lws/include/python3.7m -c -c /home/zhang/lws/PoinTr-master/extensions/chamfer_dist/chamfer_cuda.cpp -o /home/zhang/lws/PoinTr-master/extensions/chamfer_dist/build/temp.linux-x86_64-3.7/chamfer_cuda.o -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=chamfer -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
In file included from /home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/ATen/Parallel.h:149:0,
from /home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/torch/csrc/api/include/torch/utils.h:3,
from /home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/torch/csrc/api/include/torch/nn/cloneable.h:5,
from /home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/torch/csrc/api/include/torch/nn.h:3,
from /home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/torch/csrc/api/include/torch/all.h:12,
from /home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/torch/extension.h:4,
from /home/zhang/lws/PoinTr-master/extensions/chamfer_dist/chamfer_cuda.cpp:9:
/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/ATen/ParallelOpenMP.h:84:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for if ((end - begin) >= grain_size)
[2/2] /usr/local/cuda-10.1/bin/nvcc -I/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include -I/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/TH -I/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.1/include -I/home/zhang/anaconda3/envs/lws/include/python3.7m -c -c /home/zhang/lws/PoinTr-master/extensions/chamfer_dist/chamfer.cu -o /home/zhang/lws/PoinTr-master/extensions/chamfer_dist/build/temp.linux-x86_64-3.7/chamfer.o -D__CUDA_NO_HALF_OPERATORS__ -D__CUDA_NO_HALF_CONVERSIONS__ -D__CUDA_NO_HALF2_OPERATORS__ --expt-relaxed-constexpr --compiler-options ''"'"'-fPIC'"'"'' -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="gcc"' '-DPYBIND11_STDLIB="libstdcpp"' '-DPYBIND11_BUILD_ABI="cxxabi1011"' -DTORCH_EXTENSION_NAME=chamfer -D_GLIBCXX_USE_CXX11_ABI=0 -gencode=arch=compute_75,code=sm_75 -std=c++14
FAILED: /home/zhang/lws/PoinTr-master/extensions/chamfer_dist/build/temp.linux-x86_64-3.7/chamfer.o
/usr/local/cuda-10.1/bin/nvcc -I/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include -I/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/TH -I/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.1/include -I/home/zhang/anaconda3/envs/lws/include/python3.7m -c -c /home/zhang/lws/PoinTr-master/extensions/chamfer_dist/chamfer.cu -o /home/zhang/lws/PoinTr-master/extensions/chamfer_dist/build/temp.linux-x86_64-3.7/chamfer.o -D__CUDA_NO_HALF_OPERATORS -D__CUDA_NO_HALF_CONVERSIONS_ -D__CUDA_NO_HALF2_OPERATORS__ --expt-relaxed-constexpr --compiler-options ''"'"'-fPIC'"'"'' -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=chamfer -D_GLIBCXX_USE_CXX11_ABI=0 -gencode=arch=compute_75,code=sm_75 -std=c++14
/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/ATen/core/boxing/impl/boxing.h(100): warning: integer conversion resulted in a change of sign
/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/ATen/core/op_registration/op_whitelist.h(39): warning: integer conversion resulted in a change of sign
/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/ATen/core/builtin_function.h(97): warning: statement is unreachable
/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/torch/csrc/api/include/torch/enum.h(191): warning: statement is unreachable
/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/ATen/core/boxing/impl/boxing.h(100): warning: integer conversion resulted in a change of sign
/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/ATen/core/op_registration/op_whitelist.h(39): warning: integer conversion resulted in a change of sign
/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/ATen/core/builtin_function.h(97): warning: statement is unreachable
/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/include/torch/csrc/api/include/torch/enum.h(191): warning: statement is unreachable
/usr/include/c++/7/bits/basic_string.tcc: In instantiation of ‘static std::basic_string<_CharT, _Traits, _Alloc>::_Rep* std::basic_string<_CharT, _Traits, _Alloc>::_Rep::_S_create(std::basic_string<_CharT, _Traits, _Alloc>::size_type, std::basic_string<_CharT, _Traits, _Alloc>::size_type, const _Alloc&) [with _CharT = char16_t; _Traits = std::char_traits<char16_t>; _Alloc = std::allocator<char16_t>; std::basic_string<_CharT, _Traits, _Alloc>::size_type = long unsigned int]’:
/usr/include/c++/7/bits/basic_string.tcc:578:28: required from ‘static _CharT* std::basic_string<_CharT, _Traits, _Alloc>::_S_construct(_InIterator, _InIterator, const _Alloc&, std::forward_iterator_tag) [with _FwdIterator = const char16_t*; _CharT = char16_t; _Traits = std::char_traits<char16_t>; _Alloc = std::allocator<char16_t>]’
/usr/include/c++/7/bits/basic_string.h:5042:20: required from ‘static _CharT* std::basic_string<_CharT, _Traits, _Alloc>::_S_construct_aux(_InIterator, _InIterator, const _Alloc&, std::__false_type) [with _InIterator = const char16_t*; _CharT = char16_t; _Traits = std::char_traits<char16_t>; _Alloc = std::allocator<char16_t>]’
/usr/include/c++/7/bits/basic_string.h:5063:24: required from ‘static _CharT* std::basic_string<_CharT, _Traits, _Alloc>::_S_construct(_InIterator, _InIterator, const _Alloc&) [with _InIterator = const char16_t*; _CharT = char16_t; _Traits = std::char_traits<char16_t>; _Alloc = std::allocator<char16_t>]’
/usr/include/c++/7/bits/basic_string.tcc:656:134: required from ‘std::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, std::basic_string<_CharT, _Traits, _Alloc>::size_type, const _Alloc&) [with _CharT = char16_t; _Traits = std::char_traits<char16_t>; _Alloc = std::allocator<char16_t>; std::basic_string<_CharT, _Traits, _Alloc>::size_type = long unsigned int]’
/usr/include/c++/7/bits/basic_string.h:6688:95: required from here
/usr/include/c++/7/bits/basic_string.tcc:1067:16: error: cannot call member function ‘void std::basic_string<_CharT, _Traits, _Alloc>::_Rep::_M_set_sharable() [with _CharT = char16_t; _Traits = std::char_traits<char16_t>; _Alloc = std::allocator<char16_t>]’ without object
__p->_M_set_sharable();
~~~~~~~~~^~
/usr/include/c++/7/bits/basic_string.tcc: In instantiation of ‘static std::basic_string<_CharT, _Traits, _Alloc>::_Rep* std::basic_string<_CharT, _Traits, _Alloc>::_Rep::_S_create(std::basic_string<_CharT, _Traits, _Alloc>::size_type, std::basic_string<_CharT, _Traits, _Alloc>::size_type, const _Alloc&) [with _CharT = char32_t; _Traits = std::char_traits<char32_t>; _Alloc = std::allocator<char32_t>; std::basic_string<_CharT, _Traits, _Alloc>::size_type = long unsigned int]’:
/usr/include/c++/7/bits/basic_string.tcc:578:28: required from ‘static _CharT* std::basic_string<_CharT, _Traits, _Alloc>::_S_construct(_InIterator, _InIterator, const _Alloc&, std::forward_iterator_tag) [with _FwdIterator = const char32_t*; _CharT = char32_t; _Traits = std::char_traits<char32_t>; _Alloc = std::allocator<char32_t>]’
/usr/include/c++/7/bits/basic_string.h:5042:20: required from ‘static _CharT* std::basic_string<_CharT, _Traits, _Alloc>::_S_construct_aux(_InIterator, _InIterator, const _Alloc&, std::__false_type) [with _InIterator = const char32_t*; _CharT = char32_t; _Traits = std::char_traits<char32_t>; _Alloc = std::allocator<char32_t>]’
/usr/include/c++/7/bits/basic_string.h:5063:24: required from ‘static _CharT* std::basic_string<_CharT, _Traits, _Alloc>::_S_construct(_InIterator, _InIterator, const _Alloc&) [with _InIterator = const char32_t*; _CharT = char32_t; _Traits = std::char_traits<char32_t>; _Alloc = std::allocator<char32_t>]’
/usr/include/c++/7/bits/basic_string.tcc:656:134: required from ‘std::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, std::basic_string<_CharT, _Traits, _Alloc>::size_type, const _Alloc&) [with _CharT = char32_t; _Traits = std::char_traits<char32_t>; _Alloc = std::allocator<char32_t>; std::basic_string<_CharT, _Traits, _Alloc>::size_type = long unsigned int]’
/usr/include/c++/7/bits/basic_string.h:6693:95: required from here
/usr/include/c++/7/bits/basic_string.tcc:1067:16: error: cannot call member function ‘void std::basic_string<_CharT, _Traits, _Alloc>::_Rep::_M_set_sharable() [with _CharT = char32_t; _Traits = std::char_traits<char32_t>; _Alloc = std::allocator<char32_t>]’ without object
ninja: build stopped: subcommand failed.
Traceback (most recent call last):
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 1539, in _run_ninja_build
env=env)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/subprocess.py", line 512, in run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['ninja', '-v']' returned non-zero exit status 1.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "setup.py", line 19, in
cmdclass={'build_ext': BuildExtension})
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/init.py", line 87, in setup
return distutils.core.setup(**attrs)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/core.py", line 148, in setup
return run_commands(dist)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/core.py", line 163, in run_commands
dist.run_commands()
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/dist.py", line 967, in run_commands
self.run_command(cmd)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/dist.py", line 1214, in run_command
super().run_command(command)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/dist.py", line 986, in run_command
cmd_obj.run()
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/command/install.py", line 74, in run
self.do_egg_install()
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/command/install.py", line 123, in do_egg_install
self.run_command('bdist_egg')
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/dist.py", line 1214, in run_command
super().run_command(command)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/dist.py", line 986, in run_command
cmd_obj.run()
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/command/bdist_egg.py", line 165, in run
cmd = self.call_command('install_lib', warn_dir=0)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/command/bdist_egg.py", line 151, in call_command
self.run_command(cmdname)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/dist.py", line 1214, in run_command
super().run_command(command)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/dist.py", line 986, in run_command
cmd_obj.run()
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/command/install_lib.py", line 11, in run
self.build()
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/command/install_lib.py", line 107, in build
self.run_command('build_ext')
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/dist.py", line 1214, in run_command
super().run_command(command)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/dist.py", line 986, in run_command
cmd_obj.run()
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/command/build_ext.py", line 79, in run
_build_ext.run(self)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/command/build_ext.py", line 339, in run
self.build_extensions()
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 670, in build_extensions
build_ext.build_extensions(self)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/command/build_ext.py", line 448, in build_extensions
self._build_extensions_serial()
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/command/build_ext.py", line 473, in _build_extensions_serial
self.build_extension(ext)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/command/build_ext.py", line 202, in build_extension
_build_ext.build_extension(self, ext)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/setuptools/_distutils/command/build_ext.py", line 534, in build_extension
depends=ext.depends)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 500, in unix_wrap_ninja_compile
with_cuda=with_cuda)
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 1255, in _write_ninja_file_and_compile_objects
error_prefix='Error compiling objects for extension')
File "/home/zhang/anaconda3/envs/lws/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 1555, in _run_ninja_build
raise RuntimeError(message) from e
RuntimeError: Error compiling objects for extension
This is my envs:
-- pytorch 1.7.1
-- python 3.7
-- cuda 10.1
-- nvcc 10.1
I downloaded PyTorch and CUDa from the appropriate link on the PyTorch website ,but it still has NVCC errors
Can you give me some advice? thank you a lot.
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