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Merge pull request NOAA-EMC#41 from climbfuji/update_gsd_develop_from…
…_develop_20200903 Update gsd/develop from develop 2020/10/01
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,5 @@ | ||
| Dockerfile | ||
| .git | ||
| .gitignore | ||
| tests/*.log | ||
| tests/log_ut_linux.gnu |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,121 @@ | ||
| name: Pull Request Tests | ||
|
|
||
| on: | ||
| push: | ||
| branches: | ||
| - develop | ||
| pull_request: | ||
| branches: | ||
| - develop | ||
|
|
||
| jobs: | ||
| setup: | ||
| name: Set up | ||
| runs-on: ubuntu-latest | ||
|
|
||
| outputs: | ||
| tn: ${{ steps.parse.outputs.tn }} | ||
| bld: ${{ steps.parse.outputs.bld }} | ||
| test: ${{ steps.parse.outputs.test }} | ||
| img: ${{ steps.parse.outputs.img }} | ||
|
|
||
| steps: | ||
| - name: Checkout codes | ||
| uses: actions/checkout@v2 | ||
|
|
||
| - name: Parse cases | ||
| id: parse | ||
| run: | | ||
| cd ${GITHUB_WORKSPACE}/tests/ci | ||
| parsed_output=( $(./parse.sh) ) | ||
| name_=${parsed_output[0]} | ||
| bld_=${parsed_output[1]} | ||
| test_=${parsed_output[2]} | ||
| img_=${parsed_output[3]} | ||
| echo "::set-output name=tn::$name_" | ||
| echo "::set-output name=bld::$bld_" | ||
| echo "::set-output name=test::$test_" | ||
| echo "::set-output name=img::$img_" | ||
| echo "test name : $name_" | ||
| echo "build set : $bld_" | ||
| echo "test set : $test_" | ||
| echo "image name: $img_" | ||
| build: | ||
| name: Build (${{ matrix.bld_set }}) | ||
| needs: setup | ||
| runs-on: ubuntu-latest | ||
|
|
||
| strategy: | ||
| fail-fast: false | ||
| matrix: ${{ fromJson(needs.setup.outputs.bld) }} | ||
|
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| steps: | ||
| - name: Checkout codes | ||
| uses: actions/checkout@v2 | ||
| with: | ||
| submodules: recursive | ||
|
|
||
| - name: Build | ||
| run: | | ||
| printf '{\n "experimental": true\n}' | sudo tee /etc/docker/daemon.json >/dev/null | ||
| sudo systemctl restart docker | ||
| sleep 10 | ||
| cd tests/ci && ./ci.sh -n ${{ needs.setup.outputs.tn }} -b ${{ matrix.bld_set }} | ||
| - name: Free up disk space | ||
| run: | | ||
| sudo docker rmi $(sudo docker image ls | grep -E -m1 '<none>' | awk '{ print $3 }') | ||
| sudo docker rmi $(sudo docker image ls | awk '/ci-test-base/ { print $3 }') | ||
| - name: Prepare artifacts | ||
| run: | | ||
| cd tests/ci | ||
| sudo docker save ${{ needs.setup.outputs.img }} | gzip >${{ needs.setup.outputs.img }}.tar.gz | ||
| tar cvjf artifact.tar.bz2 ${{ needs.setup.outputs.img }}.tar.gz ci.sh ci.test | ||
| - name: Upload artifacts | ||
| uses: actions/upload-artifact@v2 | ||
| with: | ||
| name: ${{ matrix.bld_set }}.artifact.tar.bz2 | ||
| path: tests/ci/artifact.tar.bz2 | ||
|
|
||
| utest: | ||
| name: Unit test (${{ needs.setup.outputs.tn }}, ${{ matrix.test_set }}) | ||
| needs: [setup,build] | ||
| runs-on: ubuntu-latest | ||
| #runs-on: self-hosted | ||
|
|
||
| strategy: | ||
| fail-fast: false | ||
| matrix: ${{ fromJson(needs.setup.outputs.test) }} | ||
|
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||
| steps: | ||
| - name: Download artifacts | ||
| uses: actions/download-artifact@v2 | ||
| with: | ||
| name: ${{ matrix.artifact }}.artifact.tar.bz2 | ||
|
|
||
| - name: Prepare artifacts | ||
| run: | | ||
| tar xvjf artifact.tar.bz2 && rm -f artifact.tar.bz2 | ||
| sudo docker load --input ${{ needs.setup.outputs.img }}.tar.gz && rm -f ${{ needs.setup.outputs.img }}.tar.gz | ||
| - name: Run utest | ||
| run: ./ci.sh -n ${{ needs.setup.outputs.tn }} -r ${{ matrix.test_set }} | ||
|
|
||
| - name: Upload memory usage file | ||
| if: ${{ always() }} | ||
| uses: actions/upload-artifact@v2 | ||
| with: | ||
| name: memory_stat_${{ matrix.test_set }} | ||
| path: memory_stat | ||
|
|
||
| - name: Clean up | ||
| if: ${{ always() }} | ||
| run: | | ||
| rm -f ci.sh ci.test | ||
| sudo docker rm my-container && sudo docker rmi ${{ needs.setup.outputs.img }}:latest | ||
| sudo docker volume rm DataVolume |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,54 @@ | ||
| name: Manage workflows | ||
|
|
||
| on: | ||
| workflow_run: | ||
| workflows: ["Pull Request Tests"] | ||
| types: | ||
| - requested | ||
|
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||
| jobs: | ||
| job1: | ||
| name: Job 1 | ||
| runs-on: ubuntu-latest | ||
|
|
||
| steps: | ||
| - name: Checkout codes | ||
| uses: actions/checkout@v2 | ||
|
|
||
| - name: Check if skip-ci is requested | ||
| run: | | ||
| cd ${GITHUB_WORKSPACE}/tests/ci | ||
| repo="${GITHUB_API_URL}/repos/${GITHUB_REPOSITORY}/actions/runs" | ||
| tr_id=$(cat ${GITHUB_EVENT_PATH} | ./json_helper.py get_trigger_id) | ||
| tr_br=$(cat ${GITHUB_EVENT_PATH} | ./json_helper.py get_trigger_br) | ||
| check=$(cat ${GITHUB_EVENT_PATH} | ./json_helper.py check_skip) | ||
| echo "::set-env name=TRIGGER_ID::${tr_id}" | ||
| echo "::set-env name=TRIGGER_BR::${tr_br}" | ||
| echo "skip-ci: ${check}" | ||
| if [[ $check == yes ]]; then | ||
| echo "skip-ci is requested" | ||
| echo '::set-env name=CURR_JOB::cancelled' | ||
| curl -X POST -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" -H "Accept: application/vnd.github.v3+json" ${repo}/$tr_id/cancel | ||
| else | ||
| echo '::set-env name=CURR_JOB::running' | ||
| fi | ||
| - name: Cancel redundant jobs | ||
| run: | | ||
| echo "CURR_JOB is $CURR_JOB" | ||
| echo "TRIGGER_ID is $TRIGGER_ID" | ||
| echo "TRIGGER_BR is $TRIGGER_BR" | ||
| export GITHUB_ACTOR | ||
| export GITHUB_RUN_ID | ||
| export TRIGGER_ID | ||
| export TRIGGER_BR | ||
| cd ${GITHUB_WORKSPACE}/tests/ci | ||
| repo="${GITHUB_API_URL}/repos/${GITHUB_REPOSITORY}/actions/runs" | ||
| cancel_ids=$(curl -H "Accept: application/vnd.github.v3+json" ${repo} | ./json_helper.py cancel_workflow) | ||
| echo "cancel ids: $cancel_ids" | ||
| if [[ $cancel_ids != '' ]]; then | ||
| for i in $cancel_ids; do | ||
| curl -X POST -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" -H "Accept: application/vnd.github.v3+json" ${repo}/$i/cancel | ||
| done | ||
| fi | ||
| if: ${{ env.CURR_JOB == 'running' }} |
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Submodule FV3
updated
from 4e6475 to 4a64b7
Submodule NEMS
updated
5 files
| +1 −1 | src/MAIN_NEMS.F90 | |
| +1 −1 | src/incmake/component_CICE6.mk | |
| +2 −0 | src/incmake/component_MOM6.mk | |
| +1 −1 | src/incmake/component_WW3.mk | |
| +2 −0 | src/module_EARTH_GRID_COMP.F90 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1 +1 @@ | ||
| set(INLINE_POST ON CACHE BOOL "Enable inline post" FORCE) | ||
| set(INLINE_POST ON CACHE BOOL "Enable inline post" FORCE) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1 +1,2 @@ | ||
| set(INLINE_POST ON CACHE BOOL "Enable inline post" FORCE) | ||
| set(DEBUG_LINKMPI OFF CACHE BOOL "Enable linkmpi option when DEBUG mode is on" FORCE) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1 +1,2 @@ | ||
| set(INLINE_POST ON CACHE BOOL "Enable inline post" FORCE) | ||
| set(DEBUG_LINKMPI OFF CACHE BOOL "Enable linkmpi option when DEBUG mode is on" FORCE) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1 +1,2 @@ | ||
| set(INLINE_POST ON CACHE BOOL "Enable inline post" FORCE) | ||
| set(INLINE_POST ON CACHE BOOL "Enable inline post" FORCE) | ||
| set(PARALLEL_NETCDF ON CACHE BOOL "Enable parallel NetCDF" FORCE) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1 +1,3 @@ | ||
| set(INLINE_POST ON CACHE BOOL "Enable inline post" FORCE) | ||
| set(PARALLEL_NETCDF ON CACHE BOOL "Enable parallel NetCDF" FORCE) | ||
| set(DEBUG_LINKMPI OFF CACHE BOOL "Enable linkmpi option when DEBUG mode is on" FORCE) |
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