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--siteFile does not work ... #18

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jielab opened this issue Apr 17, 2017 · 3 comments
Closed

--siteFile does not work ... #18

jielab opened this issue Apr 17, 2017 · 3 comments

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@jielab
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jielab commented Apr 17, 2017

hi, Xiaowei:

please see the attached screenshot. I used --siteFile to limit to a list of 33 SNPs for analysis, but RVTESTS simply ignored that option and proceed analyzing all variants and therefore take a long long time.

can you please take a look to make sure that --siteFile does work?

best regards,
Jie
capture1
@zhanxw
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zhanxw commented Apr 18, 2017

I have fixed the problem.
After some more tests, I plan to put the fix online during the day.
Thanks Jie.

@zhanxw zhanxw mentioned this issue Apr 18, 2017
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@zhanxw
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zhanxw commented Apr 18, 2017

Hi Jie,

The following link is the latest release that should fix this issue:

https://github.com/zhanxw/rvtests/releases/tag/v2.0.4

Thanks.

@jielab
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jielab commented Apr 18, 2017

Thank you very much, Xiaowei!

Best regards,
Jie

@zhanxw zhanxw closed this as completed May 24, 2017
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@zhanxw @jielab