Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Error when running ribORF.pl #3

Open
mt1022 opened this issue Feb 7, 2022 · 0 comments
Open

Error when running ribORF.pl #3

mt1022 opened this issue Feb 7, 2022 · 0 comments

Comments

@mt1022
Copy link

mt1022 commented Feb 7, 2022

Hi, dear developer,

I ran RibORF with the following cmd:

perl RibORF.1.0/ribORF.pl -f sample.hisat2.corrected.sam -c RibORF_results/candidateORF.genepred.txt -o RibORF_results

The following error appeared:

Fatal error: cannot open file 'RibORF_results/ribORF.learning.R': No such file or directory

It seems that RibORF.pl checks whether the output dir was provided but won't confirm that it actually exists.

By the way, would it be ok to use hisat2 (as suggested by tophat developers) instead tophat for read mapping?
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@mt1022