Imputed genotypes to train HIBAG Models?

[adiamb]

Hello, Its not really an issue, but wonder if we can use imputed genotypes to train a HIBAG model? If so what are pros and cons of this approach in relation to using the genotyped snps? thank you for this fantastic package
Aditya

[zhengxwen]

I would suggest using directly genotyped SNP data to avoid low-quality imputed genotypes (especially rare variants).