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Repeated Training, wrong number of different celltypes #7

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Onero23 opened this issue Feb 3, 2021 · 2 comments
Closed

Repeated Training, wrong number of different celltypes #7

Onero23 opened this issue Feb 3, 2021 · 2 comments

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@Onero23
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Onero23 commented Feb 3, 2021

Hi,
Doing repeated training on different training sets will delete previous trained models. Is there a workaround?
During training only about 25% of different celltypes are recognized as unique cell types no matter how many features are included (100 genes, 1000 genes,10000 genes, etc.). Is there a maxium of unique celltypes accepted during the training process?
Thanks a lot!

@gerrardmai
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Try to set exclude_rate to 0 in train.py, may solve your problem.
parser.add_argument("--exclude_rate", type=float, default=0,help="exclude some cells less than this rate.")

@Onero23
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Onero23 commented Feb 5, 2021

Thank you very much, this solved the problem!

@Onero23 Onero23 closed this as completed Feb 19, 2021
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