sort_records
Martin Asser Hansen edited this page Oct 2, 2015
·
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sort_records sort records in the data stream using the values of a list of given keys. If values from the first key collides, then the next key's value is used, and so on.
... | sort_records [options]
[-? | --help] # Print full usage description.
[-k <list> | --keys=<list>] # Comma separated list of keys to sort by. Append n for numeric sorting instead of alphabetic.
[-r | --reverse] # Reverse sort order.
[-I <file!> | --stream_in=<file!>] # Read input from stream file - Default=STDIN
[-O <file> | --stream_out=<file>] # Write output to stream file - Default=STDOUT
[-v | --verbose] # Verbose output.
Sort records alphabetically according to SEQ:
... | sort_records -k SEQ
Sort records numerically according to SEQ_LEN:
... | sort_records -k SEQ_LENn
Output records in reverse order sorted according to SEQ_LEN and SEQ:
... | sort_records -k SEQ_LENn,SEQ -r
Martin Asser Hansen - Copyright (C) - All rights reserved.
August 2007
GNU General Public License version 2
http://www.gnu.org/copyleft/gpl.html
sort_records is part of the Biopieces framework.