write_ucsc_config
Martin Asser Hansen edited this page Oct 2, 2015
·
5 revisions
write_ucsc_config writes track configuration records in the UCSC Genome Browser track configuration format. The resulting entries will look like this:
# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
track ho_B1_Mus
shortLabel mouseB1-elements
longLabel mouseB1-elements
group h.oey
priority 1
visibility hide
type bed 6
For more about the track configuration go here:
http://genome.ucsc.edu/goldenPath/help/customTrack.html
... | write_ucsc_config [options]
[-? | --help] # Print full usage description.
[-x | --no_stream] # Do not emit records.
[-o <file> | --data_out=<file>] # Write result to file.
[-I <file!> | --stream_in=<file!>] # Read input from stream file - Default=STDIN
[-O <file> | --stream_out=<file>] # Write output to stream file - Default=STDOUT
[-v | --verbose] # Verbose output.
Writing entries to file 'test.ra'.
... | write_ucsc_config -x -o test.ra
Martin Asser Hansen - Copyright (C) - All rights reserved.
November 2008
GNU General Public License version 2
http://www.gnu.org/copyleft/gpl.html
write_ucsc_config is part of the Biopieces framework.