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Pull requests: tskit-dev/tskit

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Pull requests list

time windows in statistics
#2948 opened May 9, 2024 by petrelharp • Draft
1
extend path algorithm (extend_edgesV2)
#2938 opened Apr 25, 2024 by hfr1tz3 • Draft
1
Low level pair coalescence counts
#2932 opened Apr 18, 2024 by nspope • Draft
4
Implement efficient seeking from non-null trees using tree_pos
#2911 opened Feb 26, 2024 by duncanMR • Draft
3 tasks
4
Error when the VCF will have a zero position site
#2901 opened Feb 8, 2024 by benjeffery Loading…
1
12
Add direct links to Python and C APIs from README
#2887 opened Jan 15, 2024 by hyanwong Loading…
1
Add c/CMakeLists.txt
#2880 opened Dec 13, 2023 by lukashuebner • Draft
8
Support all-nodes matching in LSHMM
#2861 opened Oct 12, 2023 by jeromekelleher • Draft
1
Add python 3.12 support
#2860 opened Oct 11, 2023 by benjeffery • Draft
1
1
Add tests for genotype imputation
#2815 opened Aug 7, 2023 by szhan Loading…
2 of 6 tasks
1
@szhan
26
add_pbs
#2777 opened Jul 6, 2023 by atongsa Loading…
3 tasks
1
4
Add doc example of creating a matrix of all pairwise comparisons
#2776 opened Jul 5, 2023 by hyanwong Loading… Python 0.5.7
3
Add distance_between function and tests
#2771 opened Jun 22, 2023 by Billyzhang1229 Loading…
1 task done
Python 0.5.7
1
Generic iterator class for trees and variants
#2762 opened Jun 13, 2023 by hyanwong • Draft
2 of 3 tasks
1
1
add modular simplifier
#2752 opened May 8, 2023 by molpopgen • Draft
3 tasks
13
Improvement tskit treeseq from text mutations
#2734 opened Apr 4, 2023 by lukashuebner Loading…
1
3
compute mutation parents on text input
#2730 opened Apr 3, 2023 by petrelharp Loading…
8
Md null schema
#2720 opened Mar 2, 2023 by hyanwong • Draft
4
Shorthand filter_all argument for simplify
#2681 opened Jan 12, 2023 by hyanwong • Draft
2 of 3 tasks
1
4
Multichrom example
#2665 opened Dec 15, 2022 by jeromekelleher Loading… C API 1.1.2
20
Add unweighted_rf_distance (symmetric_distance) function and tests
#2643 opened Nov 21, 2022 by Billyzhang1229 Loading… Python 0.5.7
11
Add states() method to return actual genotype states as characters
#2617 opened Oct 30, 2022 by hyanwong Loading…
3 tasks done
17
Access the left and right of an edge as an interval
#2531 opened Sep 29, 2022 by hyanwong • Draft
6
Added methods to sort and squash segments in the IbdFinder output.
#2460 opened Aug 9, 2022 by gtsambos Loading…
3 tasks
1
7
Keep unary for coalescent nodes in simplify
#2381 opened Jul 4, 2022 by jeromekelleher • Draft
23
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