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SLIX – Scattered Light Imaging ToolboX

• Introduction
  • SLI Measurement
  • SLI Profiles
  • Parameter Maps
• Installation of SLIX
• Evaluation of SLI Profiles
  • Required Arguments
  • Optional Arguments
  • Example
• Generation of Parameter Maps
  • Required Arguments
  • Optional Arguments
  • Example
  • Resulting Parameter Maps
• Performance Metrics
• Tutorial
• API documentation
  • toolbox.py
  • visualization.py

References

	Fiber Architecture - INM1 - Forschungszentrum Jülich
	Human Brain Project

Acknowledgements

This open source software code was developed in part or in whole in the Human Brain Project, funded from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Specific Grant Agreement No. 785907 and 945539 ("Human Brain Project" SGA2 and SGA3). The project also received funding from the Helmholtz Association port-folio theme "Supercomputing and Modeling for the Human Brain".

License

This software is released under MIT License

Copyright (c) 2020 Forschungszentrum Jülich / Jan André Reuter.
Copyright (c) 2020 Forschungszentrum Jülich / Miriam Menzel.

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.python input parameters -i -o

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.