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fixed doc arrangement
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SooLee committed Nov 24, 2019
1 parent 8fc2fa8 commit 639f85b
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Showing 4 changed files with 6 additions and 6 deletions.
1 change: 0 additions & 1 deletion docs/index.rst
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Expand Up @@ -87,7 +87,6 @@ Contents:
api
execution_json
monitoring
collecting_metrics
cwl
wdl
snakemake
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4 changes: 3 additions & 1 deletion docs/monitoring.rst
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Expand Up @@ -398,13 +398,15 @@ Cloudwatch dashboard option is now disabled and replaced by the resource metric




.. toctree::
:hidden:

monitoring


.. toctree::
:maxdepth: 2
:maxdepth: 4

collecting_metrics

2 changes: 1 addition & 1 deletion tibanna/_version.py
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@@ -1,4 +1,4 @@
"""Version information."""

# The following line *must* be the last in the module, exactly as formatted:
__version__ = "0.11.0"
__version__ = "0.11.1"
5 changes: 2 additions & 3 deletions tibanna/ec2_utils.py
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Expand Up @@ -268,8 +268,7 @@ def fill_default(self):
self.spot_instance = False
if not hasattr(self, "behavior_on_capacity_limit"):
self.behavior_on_capacity_limit = 'fail'
if not hasattr(self, 'cloudwatch_dashboard'):
self.cloudwatch_dashboard = False
self.cloudwatch_dashboard = False # now this is always false
# postrun json should be made public?
if not hasattr(self, 'public_postrun_json'):
self.public_postrun_json = False
Expand Down Expand Up @@ -590,7 +589,7 @@ def create_run_json_dict(self):
'profile': value.get('profile', ''),
'unzip': value.get('unzip', ''),
'mount': value.get('mount', '')}

for item, value in iter(args.secondary_files.items()):
if value.get('unzip', '') not in ['gz', 'bz2', '']:
raise MalFormattedInputJsonException("unzip field must be gz, bz2 or ''")
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