test coverage of `collapse --chain` for #196 #726

	name: FuncTests

	on: [push]

	jobs:
	build:
	runs-on: ubuntu-22.04

	steps:
	- uses: actions/checkout@v3
	with:
	persist-credentials: false
	fetch-depth: 0
	- name: Set up Python 3.10.4
	uses: actions/setup-python@v4
	with:
	python-version: 3.10.4
	- name: Cache python
	uses: actions/cache@v3
	with:
	path: ${{ env.pythonLocation }}
	key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}
	- name: Install dependencies
	run: \|
	python3 -m pip install --upgrade pip setuptools
	python3 -m pip install Cython pylint anybadge coverage
	python3 -m pip install .
	- name: Running ssshtest
	run: \|
	bash repo_utils/truvari_ssshtests.sh
	- name: Uploading coverage
	uses: actions/upload-artifact@v3
	with:
	name: htmlcov
	path: test_results/htmlcov
	- name: Commit README
	run: \|
	git config --local user.email "41898282+github-actions[bot]@users.noreply.github.com"
	git config --local user.name "github-actions[bot]"
	git commit -m "Update coverage score" -a \|\| echo "No changes to commit"
	- name: Push README
	uses: ad-m/github-push-action@master
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	branch: ${{ github.ref }}

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