Allow csi-indexed vcf files #209
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ACEnglish
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Apr 8, 2024
functional tests passed. pylint wanted changes ``` % python repo_utils/pylint_maker.py ************* Module truvari.utils truvari/utils.py:448:0: C0305: Trailing newlines (trailing-newlines) truvari/utils.py:447:11: R1729: Use a generator instead 'any(os.path.exists(vcf_path + '.' + x) for x in vcf_index_ext)' (use-a-generator) ``` Updated `truvari/annotations/trf.py` to use the new method. Added the new method to api docs in `docs/api/truvari.rst`
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It looks like truvari already works with csi-indexed VCF files via support from pysam, but just needs updated input validation.