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* Add M. Reza case. First version. * Update Mohammadreza case. * Update input file. * Add pmf_data file * Use previous Ubuntu for now, latest has issues with apt-get update * Shorten pipeflow test.
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| Original file line number | Diff line number | Diff line change |
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| TOP = ../../../.. | ||
| AMREX_HOME ?= ${TOP}/amrex | ||
| PELELMEX_HOME ?= ${TOP}/PeleLMeX | ||
| PELE_PHYSICS_HOME ?= ${TOP}/PelePhysics | ||
| AMREX_HYDRO_HOME ?= ${TOP}/AMReX-Hydro | ||
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| # AMReX | ||
| DIM = 3 | ||
| DEBUG = FALSE | ||
| PRECISION = DOUBLE | ||
| VERBOSE = FALSE | ||
| TINY_PROFILE = FALSE | ||
| USE_EB = TRUE | ||
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| # Compilation | ||
| COMP = gnu | ||
| USE_MPI = TRUE | ||
| USE_OMP = FALSE | ||
| USE_CUDA = FALSE | ||
| USE_HIP = FALSE | ||
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| # PeleLMeX | ||
| USE_EFIELD = FALSE | ||
| USE_TURBINFLOW = TRUE | ||
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| # PelePhysics | ||
| Chemistry_Model = drm19 | ||
| Eos_Model = Fuego | ||
| Transport_Model = Simple | ||
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| include $(PELELMEX_HOME)/Utils/Make.PeleLMeX |
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| #------------- | ||
| geometry.is_periodic = 0 0 0 # Periodicity in each direction: 0 => no, 1 => yes | ||
| geometry.coord_sys = 0 # 0 => cart, 1 => RZ | ||
| geometry.prob_lo = 0.00 0.00 0.0 # x_lo y_lo | ||
| geometry.prob_hi = 0.32 0.32 0.32 # x_hi y_hi | ||
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| # >>>>>>>>>>>>> BC FLAGS <<<<<<<<<<<<<<<< | ||
| # Interior, Inflow, Outflow, Symmetry, | ||
| # SlipWallAdiab, NoSlipWallAdiab, SlipWallIsotherm, NoSlipWallIsotherm | ||
| peleLM.lo_bc = Outflow Outflow Inflow | ||
| peleLM.hi_bc = Outflow Outflow Outflow | ||
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| #-------------------------AMR CONTROL---------------------------- | ||
| amr.n_cell = 256 256 256 # Level 0 number of cells in each direction | ||
| amr.v = 1 # amr verbosity level | ||
| amr.max_level = 1 # maximum level number allowed | ||
| amr.ref_ratio = 2 2 2 2 # refinement ratio | ||
| amr.regrid_int = 1 # how often to regrid | ||
| amr.n_error_buf = 1 1 1 2 # number of buffer cells in error est | ||
| amr.grid_eff = 0.7 # what constitutes an efficient grid | ||
| amr.blocking_factor = 16 # block factor in grid generation | ||
| amr.max_grid_size = 128 # maximum box size | ||
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| #----------------------- PROBLEM PARAMETERS -------------------- | ||
| prob.standoff = -0.29 | ||
| prob.pertmag = 0.004 | ||
| prob.amplification = 10 | ||
| pmf.datafile = "pmfdata.dat" | ||
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| #----------------------TIME STEPING CONTROL---------------------- | ||
| amr.max_step = 50 # maximum number of time steps | ||
| amr.stop_time = 1.001 # final physical time | ||
| amr.cfl = 0.75 # cfl number for hyperbolic system | ||
| amr.dt_shrink = 0.001 # scale back initial timestep | ||
| amr.change_max = 1.1 # max timestep size increase | ||
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| #-------------------------IO CONTROL---------------------------- | ||
| #amr.restart = chk00050 | ||
| amr.check_file = chk # root name of checkpoint file | ||
| amr.check_int = 100 # number of timesteps between checkpoints | ||
| amr.plot_file = plt # root name of plot file | ||
| amr.plot_int = 10 # number of timesteps between plot files | ||
| amr.derive_plot_vars = mag_vort avg_pressure mass_fractions | ||
| amr.grid_log = grdlog # name of grid logging file | ||
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| #-------------------------PeleLM CONTROL---------------------------- | ||
| peleLM.v = 1 | ||
| peleLM.incompressible = 0 | ||
| peleLM.rho = 1.17 | ||
| peleLM.mu = 0.0 | ||
| peleLM.use_wbar = 1 | ||
| peleLM.sdc_iterMax = 1 | ||
| peleLM.floor_species = 0 | ||
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| #--------------------REFINEMENT CONTROL------------------------ | ||
| amr.refinement_indicators = magvort HR #flame_tracer flame_tracer2 gradT | ||
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| #amr.lo_temp.max_level = 4 | ||
| #amr.lo_temp.value_greater = 1000 | ||
| #amr.lo_temp.field_name = temp | ||
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| #amr.gradT.max_level = 3 | ||
| #amr.gradT.adjacent_difference_greater = 100 | ||
| #amr.gradT.field_name = temp | ||
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| amr.HR.max_level = 3 | ||
| amr.HR.value_greater = 1.e8 | ||
| amr.HR.field_name = HeatRelease | ||
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| #amr.flame_tracer2.max_level = 3 | ||
| #amr.flame_tracer2.value_greater = 5.e-5 | ||
| #amr.flame_tracer2.field_name = Y(CH2O) | ||
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| #amr.flame_tracer.max_level = 3 | ||
| #amr.flame_tracer.value_greater = 1.0e-6 | ||
| #amr.flame_tracer.field_name = Y(HCO) | ||
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| # Refinement according to the vorticity, no field_name needed | ||
| amr.refinement_indicators = magvort | ||
| amr.magvort.max_level = 3 | ||
| amr.magvort.vorticity_greater = 1000 | ||
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| # --------------- INPUTS TO CHEMISTRY REACTOR --------------- | ||
| peleLM.chem_integrator = "ReactorCvode" | ||
| peleLM.use_typ_vals_chem = 1 # Use species/temp typical values in CVODE | ||
| ode.rtol = 1.0e-6 # Relative tolerance of the chemical solve | ||
| ode.atol = 1.0e-5 # Absolute tolerance factor applied on typical values | ||
| cvode.solve_type = GMRES # CVODE Linear solve type (for Newton direction) | ||
| cvode.max_order = 4 # CVODE max BDF order. | ||
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| #--------------------------OMP TILE INPUTS----------------------------- | ||
| #fabarray.mfiter_tile_size = 512 512 512 | ||
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| #--------------------------DEBUG/REGTESTS INPUTS----------------------------- | ||
| amrex.regtest_reduction = 0 | ||
| amrex.fpe_trap_invalid = 0 | ||
| amrex.fpe_trap_zero = 0 | ||
| amrex.fpe_trap_overflow = 0 | ||
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| #------------------- Embedded boundary--------------------------------- | ||
| eb2.geom_type = plane | ||
| eb2.plane_point = 0.00556 0.0018564 -0.006451 | ||
| eb2.plane_normal = 0 -1 0.6 | ||
| eb2.small_volfrac = 1.0e-3 |
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