Skip to content

Issues: ANGSD/angsd

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

158 Open 419 Closed
158 Open 419 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

ANGSD website down?
#638 opened Nov 11, 2024 by nickylustenhouwer
1
realSFS saf2theta error: -> Pxroblem with size of dimension of prior 9 vs 44323
#637 opened Oct 31, 2024 by GuidoGallo
Expected and observed hets
#636 opened Oct 10, 2024 by ebutoto
covariates not used in association tests with .sample file.
#635 opened Sep 23, 2024 by RJDan
Should I downsample to same sequence depth when call snp using ANGSD
#634 opened Sep 14, 2024 by jiangzy26
1
"allocate too much memory" realSFS FST
#633 opened Sep 10, 2024 by jmhallas
doSaf 1 issue: "problems receiving data in [algoJoint] will exit"
#632 opened Sep 6, 2024 by msrigyan
Issue with angsd -doSaf 1 Not Generating Proper saf.idx File
#631 opened Aug 26, 2024 by shiwen999
bcf output file with "." at QUAL column
#630 opened Aug 6, 2024 by martaolmu
1
bcf file doesn't open
#628 opened Jul 12, 2024 by renatasoar3s
SAF file out of sync
#627 opened Jun 17, 2024 by JoaoNunes15
Problems with unsorted saf file chromoname
#626 opened Jun 10, 2024 by MboiTui
1
Killed
#625 opened May 29, 2024 by isnmn
1
estAvgError.R script error
#623 opened May 24, 2024 by lakshsesh97
0 sites retained after filtering when using -sites
#622 opened May 14, 2024 by henriquebatalha
1
angsd: realloc() error
#621 opened May 13, 2024 by iremdnzl
merging binary all 10 log genotype likelihood
#620 opened May 2, 2024 by elenaasensimartinez
Number of numbers output by realSFS
#619 opened Apr 24, 2024 by Erikacj
1
Missing windows in thetaStat
#618 opened Apr 19, 2024 by jbruxaux
[loadChr] Error loading fasta info from chr
#617 opened Mar 14, 2024 by dlema82
Population level theta with saf2theta
#616 opened Mar 6, 2024 by jmhallas
Contamination test, Error in dimnames(x)
#615 opened Feb 21, 2024 by asli1-han
Length of fastafile vs length of chr in BAM header
#614 opened Feb 15, 2024 by pedrosenna
1
problems with estAvgError.R
#613 opened Feb 3, 2024 by OthmanSN
1
Segmentation Fault
#612 opened Jan 29, 2024 by ciselkemahli
1
ProTip! Find all open issues with in progress development work with linked:pr.