Suggested for 'plot'

[dorianps]

1. Enable adding a title to the plot.
2. Crop better the image so it doesn't plot in two rows when not necessary.
3. Fix slices='84x84x1' so it gets simply slices=84, or better slices=84:90, or slices=c(20,32,56) for multiple images.

[stnava]

also color bar ....

this simple example should also work much better

mni<-antsImageRead( getANTsRData("ch2") , 3 ) 
plot( mni )

[dorianps]

btw, just updated to latest antsr and plot now diplays stretched images.

[bkandel]

The numeric vector for specifying slices should work.

No idea where the squished images came from. I'll take a look at that.

[bkandel]

Squished images should be fixed now, and a basic version of colorbar works. Still working on getting the proportions done reasonably.

[bkandel]

It is possible to add a title to both the image and colorbar now, but location is still an issue. Automatic image cropping also works now.

[dorianps]

It's working now, thanks.

I am having an issue with images cropped to a single slice. They should appear full slice on the image, but they still appear as a raw with only a slice at the beginning. Not sure this needs a fix, the problem is cropImage and cropIndices, which produce still a 3D image even when a single slice is selected. Will post this on another issue.

[bkandel]

Another suggestion from Dorian: Separate auto-slice selector from cropping
the image, so you can have one without the other.

2015-03-14 22:42 GMT-04:00 dorianps notifications@github.com:

It's working now, thanks.

I am having an issue with images cropped to a single slice. They should
appear full slice on the image, but they still appear as a raw with only a
slice at the beginning. Not sure this needs a fix, the problem is cropImage
and cropIndices, which produce still a 3D image even when a single slice is
selected. Will post this on another issue.

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#19 (comment).

[dorianps]

1. Change plotting to stack slices in a 4:3 format instead of a single line.
2. Title and colorbar are not in correct position.

[bkandel]

Also title doesn't work at all unless colorbar is enabled.

2015-03-20 16:35 GMT-04:00 dorianps notifications@github.com:

Change plotting to stack slices in a 4:3 format instead of a single
line.
2.

Title and colorbar are not in correct position.

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#19 (comment).

[stnava]

i think most of this is addressed now.