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@AWGL

All Wales Medical Genomics Service

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  1. variant_classification_DB variant_classification_DB Public

    A database for storing the classification of variants.

    Python 5

  2. auto_qc auto_qc Public

    Automatic NGS Pipeline Monitoring and Quality Control

    JavaScript 2 1

  3. DragenWGS DragenWGS Public

    A pipeline for analysing WGS data on the Dragen

    Shell 2 1

  4. resources resources Public

    Links to useful resources

    1

  5. SomaticEnrichment SomaticEnrichment Public

    NGS pipeline for the detection of somatic variation (SNVs & CNVs) and fusion genes

    Shell 1 1

  6. NIPD NIPD Public

    Non Invasive Prenatal Diagnosis - Variant Calling Pipeline and Analysis Software

    1

Repositories

Showing 10 of 69 repositories
  • copy_tsca Public

    Copying files for TruSight Cancer workflow

    AWGL/copy_tsca’s past year of commit activity
    Python 0 0 1 1 Updated Nov 5, 2024
  • auto_qc Public

    Automatic NGS Pipeline Monitoring and Quality Control

    AWGL/auto_qc’s past year of commit activity
    JavaScript 2 1 14 (1 issue needs help) 4 Updated Nov 4, 2024
  • somatic_db Public

    A database for analysing cancer NGS data within AWMGS

    AWGL/somatic_db’s past year of commit activity
    Python 0 2 14 4 Updated Oct 31, 2024
  • somalier_wrapper Public

    wrapper scripts for estimating relatedness between samples using the software Somalier

    AWGL/somalier_wrapper’s past year of commit activity
    0 0 0 1 Updated Oct 25, 2024
  • TSO500_post_processing Public
    AWGL/TSO500_post_processing’s past year of commit activity
    Python 0 0 7 0 Updated Oct 24, 2024
  • SomaticAmplicon Public Forked from mcgml/SomaticAmplicon

    NGS pipeline for somatic variant calling from amplicon datasets

    AWGL/SomaticAmplicon’s past year of commit activity
    Shell 0 3 2 0 Updated Oct 16, 2024
  • variant_classification_DB Public

    A database for storing the classification of variants.

    AWGL/variant_classification_DB’s past year of commit activity
    Python 5 0 10 1 Updated Sep 17, 2024
  • DragenWGS Public

    A pipeline for analysing WGS data on the Dragen

    AWGL/DragenWGS’s past year of commit activity
    Shell 2 1 3 1 Updated Aug 16, 2024
  • IlluminaQC-WREN Public Forked from mbyvcm/IlluminaQC-WREN
    AWGL/IlluminaQC-WREN’s past year of commit activity
    Shell 0 1 3 2 Updated Jun 17, 2024
  • DragenGE Public

    Pipeline for joint calling of samples from targeted enrichment assays.

    AWGL/DragenGE’s past year of commit activity
    Shell 0 0 1 1 Updated May 15, 2024
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