Graph Clustering with Graph Neural Networks Modified by F.Velikonivtsev (Original project)

This is the implementation accompanying our paper, Graph Clustering with Graph Neural Networks.

Install requeirements:

pip3 install -r requirements.txt

Example usage

This code will work on contact map with features and graph structure encoded in .npz format, store output in dmon.tsv. It will be suitable for AMBER usage:

python3 -m train --graph_path=contact_map.npz --dropout_rate=0.5 --out=data/dmon.tsv --header_file=ground_truth.tsv --sample_id=contact_map