Request to Replace Sweave Vignettes with R Markdown

[sonali8434]

Hello @Accio, I'm a Sweave2Rmd volunteer. @jwokaty and I are trying to replace Bioconductor Sweave vignettes with R Markdown. It has many advantages over Sweave vignettes, such as R Markdown converts to HTML, uses BiocStyle, and is easier to maintain.

Would you consider accepting a pull request for the R Markdown version of following vignettes from one of our volunteers?

• KEGGgraph/vignettes/KEGGgraph.Rnw
• KEGGgraph/vignettes/KEGGgraphApp.Rnw

We'll ask you to review and accept the pull request. You'll also need to bump the version number in your DESCRIPTION file so that the Bioconductor build machines will recognize that a new version is available.

Thank you for your time, I look forward to your response.

[Accio]

Dear Sonali, That's kind of you. Yes, please make PR and I am glad to get your help. If there is anything I can do to help you, please let me know, too. Best regards, David Am Mo., 26. Juni 2023 um 11:20 Uhr schrieb Sonali Kumari < ***@***.***>:

…

Hello @Accio <https://github.com/Accio>, I'm a Sweave2Rmd <https://github.com/Bioconductor/sweave2rmd> volunteer. @jwokaty <https://github.com/jwokaty> and I are trying to replace Bioconductor Sweave vignettes with R Markdown. It has many advantages over Sweave vignettes, such as R Markdown converts to HTML, uses BiocStyle, and is easier to maintain. Would you consider accepting a pull request for the R Markdown version of following vignettes from one of our volunteers? - KEGGgraph/vignettes/KEGGgraph.Rnw - KEGGgraph/vignettes/KEGGgraphApp.Rnw We'll ask you to review and accept the pull request. You'll also need to bump the version number in your DESCRIPTION file so that the Bioconductor build machines will recognize that a new version is available. Thank you for your time, I look forward to your response. — Reply to this email directly, view it on GitHub <#15>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAKVCIGITBZDA5LGSKCDJNTXNFH7BANCNFSM6AAAAAAZT332OU> . You are receiving this because you were mentioned.Message ID: ***@***.***>

-- Jitao David Zhang http://jdzhang.me/ ***@***.*** Inzlingerstrasse 53 4125 Riehen, Switzerland