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Release 0.1.0 #36

Merged
merged 164 commits into from
Jul 16, 2024
Merged

Release 0.1.0 #36

merged 164 commits into from
Jul 16, 2024

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yeshaokai
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@yeshaokai yeshaokai commented Jul 5, 2024 •
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Change log

  • Refactored the codebase so every module is well grouped and structured
  • Rewrote the implementation of Event
  • Manager classes manage analysis objects. Their methods are then attached to AnimalBehaviorAnalysis.
    • Every config uniquely maps to a AnimalBehaviorAnalysis Instance
  • Used registry to handle core API, task program and integration apis
  • Added sandbox that's responsible for isolating python scope and running code
    • Every sandbox owns a AnimalBehaviorAnalysis Instance
  • Separate code generation and code execution
  • Cleaner front end and back end separation
  • Added informative demo notebooks
  • Simplify installation and requirements
  • Added DeepLabCut Pytorch SuperAnimal and GPT-4o
  • Temporarily removed SAM and SAM cached objects to prepare for language queriable SAM
  • Temporarily removed dockerfile for it being outdated

@yeshaokai
Added core refactoring code
b641f91
@yeshaokai
Added config class
bcfd498
@yeshaokai
Better handled typing and required modules for task program
40c6d23
@yeshaokai
removed brains
2beedc3
@yeshaokai
WIP
75411ab
@yeshaokai
backup
7acb438
@yeshaokai
Added common task programs
7d5c617
@yeshaokai
fixed bugs in composite events
00b3ca1
@yeshaokai
fixed yet another bug
51c6257
@yeshaokai
changed the way comparison works
419e5f2
@yeshaokai
WIP
083c1b6
@yeshaokai
WIP
4941103
@yeshaokai
before correcting animal state fusion
ac7fe2c
@yeshaokai
fixed how we handle animal state fusion
acb04e0
@yeshaokai
Fixed some bug
4065945
@yeshaokai
separated text rendering and execution rendering
b47a996
@yeshaokai
added cached amaudes creation
f87b147
@yeshaokai
better rendering of function rets
0c73978
@yeshaokai
integration module works again
492893a
@yeshaokai
fixed the duplicate plot
9dd8903
@yeshaokai
added context window length control
38f94d0
@yeshaokai
Some improvements
cc60646
@yeshaokai
black and isort
4cf1f0e
@yeshaokai
Fixed token cost calculation and revert y axis
e0d0e86
@yeshaokai
removed unused files
dca963f
@yeshaokai
Added back the example data
5b8ad43
@yeshaokai
replaced mabe keypoint files
5b432f2
@yeshaokai
Added roi object names into system prompt and fixed a bug
f3df726
@yeshaokai
Fixed another bug
e5f8545
@yeshaokai
Fixed an bug in head angle
23db4ac
@yeshaokai
Update README.md
4038e3b
@yeshaokai
some clean up and some docs
d6eeba6
@yeshaokai
Change result cache to defaultdict(dict) and added a new notebook for…
5396098 
… task program library
@yeshaokai
llm generated function automatically registered to task program
abbca4f
@yeshaokai
Merge branch 'release-0.1.0' of github.com:AdaptiveMotorControlLab/Am…
123008b 
…adeusGPT into release-0.1.0
@yeshaokai
Update README.md
2f76a73
@yeshaokai
added one more line in demo
c2d6a6d
@yeshaokai
Merge branch 'release-0.1.0' of github.com:AdaptiveMotorControlLab/Am…
a50dc9d 
…adeusGPT into release-0.1.0
@yeshaokai
Update README.md
b43835d
@yeshaokai
Update README.md
97441fe
@yeshaokai
Update README.md
3afb3b5
@yeshaokai
Update README.md
369ad27
@yeshaokai
updated the installation scripts to contain kernel installation
40cf641
@yeshaokai
Added template yaml
17c3ed4
@yeshaokai
prevent llm written code to be registered if it got runtime error
7b3bceb
@yeshaokai
Added GPT-4o baseline
0de9d86
@yeshaokai
WIP
8479438
@yeshaokai
some bug fixes
9969ec5
@yeshaokai
wip
3cbb8c3
@yeshaokai
Fixed a bug in window update
b09bc2f
@yeshaokai
Fixed a bug in update history
c3a6747
@yeshaokai
Fixed a bug in text plus image content generation
dbdcf05
@yeshaokai
separated animal from object
b4bc285
@yeshaokai
updates
7a29ced
@yeshaokai
removed agentic folder
cd1fd29
@yeshaokai
fixed acceleration
76e139a
@yeshaokai
conflict solved
cccbb36
MMathisLab
MMathisLab approved these changes Jul 16, 2024
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I did not do an in-depth review, but I vote to merge now, and refine later

@yeshaokai yeshaokai merged commit 8813557 into main Jul 16, 2024
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@MMathisLab MMathisLab deleted the release-0.1.0 branch July 28, 2024 10:15
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@MMathisLab MMathisLab MMathisLab approved these changes

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@yeshaokai @MMathisLab