Gen cost #236
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Gen cost #236
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* stepsize calculation fix, needs to be cythonised * adds tolerance for root finding and tiny step to avoid stalling for zero stepsize * use a fraction of the msa stepsize when line search fails * stepsize tolerance heuristic, needs real-world instance testing * simple cython stepsize calc * use partial application to feed in non-stepsize dependent term into optimizer * fixes setting number of cores for assignment with positive integer (#231) * gets cost indexed as supernet * Adds new version to documentation index
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