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Yuankun/update v4 release #101

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Yuankun/update v4 release #101

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yuankunzhu
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Purpose/implementation

data release updates for v4

  • changes:
    • Clinical V4:
      • De-duplicated BS_6DCSD5Y6 in the clinical file by removing row with wrong age
      • Added units to age_at_diagnosis column (age_at_diagnosis_days)
    • new RSEM file:
      • Remove QC-failed samples from V3 RSEM.
      • Add BS_XM1AHBDJ which should be included, but was missing from the V3 RSEM
    • new LUMPY file:
      • Add data for 628 more subjects which was missing from V3 LUMPY

Issue

Directions for reviewers

changed on release notes and download script. file content updated for pbta-gene-expression-rsem.fpkm.rds, pbta-histologies.tsv, pbta-sv-lumpy.tsv.gz and md5sum.txt.

Results

Docker and continuous integration

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