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1. treematcher treematcher Public

   Forked from etetoolkit/treematcher

   a prototype code for the GSoC 2016 project idea: Tree searching using regular-expression-like queries

   Python 1

2. NextGenerationSequencing NextGenerationSequencing Public

   Sample of a completed project. Note that the data files are rather large so they are not included here.

   Python

3. TheMissingDataProblem TheMissingDataProblem Public

   Exploratory analysis utilizing job clustering on a supercomputer. (Dependencies: Numpy and DendroPy. Also uses the standard Python libraries glob, os, random, re, shutil, subprocess, and sys).

   Python

4. HierarchicalStructure HierarchicalStructure Public

   Runs Structure software recursively on three datasets (Requires only the standard Python libraries glob and os)

   Python

5. SimpleTreeSequenceSimulator SimpleTreeSequenceSimulator Public

   Object Oriented Programming - simulate sequences for a given tree. (Requires only the standard Python libraries random and sys)

   Python

6. TimeTreeMatrix TimeTreeMatrix Public

   Creates an nxn matrix for n taxa of divergence times using TimeTree.org

   Python