Skip to content

Commit

Permalink
up
Browse files Browse the repository at this point in the history
  • Loading branch information
AlphaPrime7 committed Aug 22, 2023
1 parent d57ef21 commit bfbf453
Show file tree
Hide file tree
Showing 2 changed files with 57 additions and 23 deletions.
2 changes: 1 addition & 1 deletion README.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@ knitr::opts_chunk$set(
[![Project Status](https://www.repostatus.org/badges/latest/active.svg)](https://github.com/AlphaPrime7/normfluodbf/commits)
[![Project Status](https://www.repostatus.org/badges/latest/wip.svg)](https://github.com/AlphaPrime7/normfluodbf/commits)
[![lifecycle](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://lifecycle.r-lib.org/articles/stages.html)
[![saythanks](https://img.shields.io/badge/say-thanks-ff69b4.svg)](https://saythanks.io/to/GuangchuangYu)
[![saythanks](https://img.shields.io/badge/say-thanks-ff69b4.svg)](https://github.com/AlphaPrime7/normfluodbf)
[![test-coverage](https://github.com/AlphaPrime7/normfluodbf/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/AlphaPrime7/normfluodbf/actions/workflows/test-coverage.yaml)
[![license](https://img.shields.io/badge/license-GPL--3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.en.html)
[![Maintenance](https://img.shields.io/badge/Maintained%3F-yes-green.svg)](https://github.com/AlphaPrime7/normfluodbf/graphs/commit-activity)
Expand Down
78 changes: 56 additions & 22 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,16 +1,33 @@
Tingwei Adeck August 21, 2023
Tingwei Adeck
August 21, 2023

<!-- README.md is generated from README.Rmd. Please edit that file -->

# normfluodbf <img src="man/figures/logo.png" align="right" width="180"/>

[![Project status](https://www.repostatus.org/badges/latest/concept.svg)](https://github.com/AlphaPrime7/normfluodbf/commits) [![Project Status](https://www.repostatus.org/badges/latest/active.svg)](https://github.com/AlphaPrime7/normfluodbf/commits) [![Project Status](https://www.repostatus.org/badges/latest/wip.svg)](https://github.com/AlphaPrime7/normfluodbf/commits) [![lifecycle](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://lifecycle.r-lib.org/articles/stages.html) [![saythanks](https://img.shields.io/badge/say-thanks-ff69b4.svg)](https://saythanks.io/to/GuangchuangYu) [![test-coverage](https://github.com/AlphaPrime7/normfluodbf/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/AlphaPrime7/normfluodbf/actions/workflows/test-coverage.yaml) [![license](https://img.shields.io/badge/license-GPL--3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.en.html) [![Maintenance](https://img.shields.io/badge/Maintained%3F-yes-green.svg)](https://github.com/AlphaPrime7/normfluodbf/graphs/commit-activity)

The goal of [`{normfluodbf}`](https://github.com/AlphaPrime7/normfluodbf) is to normalize fluorescence data obtained from liposome flux assay experiments via the FLUOstar microplate reader. Input or source file is a .dbf file that is not ready for analysis without processing through {normfluodbf}. There is a ShinyApp for this as well.
# normfluodbf <img src="man/figures/logo.png" align="right" width="180" />

[![Project
status](https://www.repostatus.org/badges/latest/concept.svg)](https://github.com/AlphaPrime7/normfluodbf/commits)
[![Project
Status](https://www.repostatus.org/badges/latest/active.svg)](https://github.com/AlphaPrime7/normfluodbf/commits)
[![Project
Status](https://www.repostatus.org/badges/latest/wip.svg)](https://github.com/AlphaPrime7/normfluodbf/commits)
[![lifecycle](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://lifecycle.r-lib.org/articles/stages.html)
[![saythanks](https://img.shields.io/badge/say-thanks-ff69b4.svg)](https://github.com/AlphaPrime7/normfluodbf)
[![test-coverage](https://github.com/AlphaPrime7/normfluodbf/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/AlphaPrime7/normfluodbf/actions/workflows/test-coverage.yaml)
[![license](https://img.shields.io/badge/license-GPL--3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.en.html)
[![Maintenance](https://img.shields.io/badge/Maintained%3F-yes-green.svg)](https://github.com/AlphaPrime7/normfluodbf/graphs/commit-activity)

The goal of
[`{normfluodbf}`](https://github.com/AlphaPrime7/normfluodbf) is to
normalize fluorescence data obtained from liposome flux assay
experiments via the FLUOstar microplate reader. Input or source file is
a .dbf file that is not ready for analysis without processing through
{normfluodbf}. There is a ShinyApp for this as well.

## ↓ Installation

You can install the development version of normfluodbf from [`{normfluodbf}`](https://github.com/AlphaPrime7/normfluodbf) with:
You can install the development version of normfluodbf from
[`{normfluodbf}`](https://github.com/AlphaPrime7/normfluodbf) with:

``` r
install.packages("devtools")
Expand All @@ -34,25 +51,42 @@ normalized_data <- normfluodbf(liposomes_214)

## R packages used

- tidyr
- data.table
- foreign
- tibble
- tidyr
- data.table
- foreign
- tibble

# References

(Dowle and Srinivasan 2023) (R Core Team 2022) (Wickham et al. 2019)

::: {#refs .references .csl-bib-body .hanging-indent}
::: {#ref-datatable .csl-entry}
Dowle, Matt, and Arun Srinivasan. 2023. [*data.table*]{.nocase}*: Extension of "[data.frame]{.nocase}"*. <https://CRAN.R-project.org/package=data.table>.
:::
<div id="refs" class="references csl-bib-body hanging-indent">

<div id="ref-datatable" class="csl-entry">

Dowle, Matt, and Arun Srinivasan. 2023.
*<span class="nocase">data.table</span>: Extension of
“<span class="nocase">data.frame</span>”*.
<https://CRAN.R-project.org/package=data.table>.

</div>

<div id="ref-foreign" class="csl-entry">

R Core Team. 2022. *<span class="nocase">foreign</span>: Read Data
Stored by “Minitab,” “S,” “SAS,” “SPSS,” “Stata,” “Systat,” “Weka,”
“<span class="nocase">dBase</span>,” ...*
<https://CRAN.R-project.org/package=foreign>.

</div>

<div id="ref-tidyverse" class="csl-entry">

Wickham, Hadley, Mara Averick, Jennifer Bryan, Winston Chang, Lucy
D’Agostino McGowan, Romain François, Garrett Grolemund, et al. 2019.
“Welcome to the <span class="nocase">tidyverse</span>.” *Journal of Open
Source Software* 4 (43): 1686. <https://doi.org/10.21105/joss.01686>.

::: {#ref-foreign .csl-entry}
R Core Team. 2022. [*foreign*]{.nocase}*: Read Data Stored by "Minitab," "S," "SAS," "SPSS," "Stata," "Systat," "Weka," "[dBase]{.nocase}," ...* <https://CRAN.R-project.org/package=foreign>.
:::
</div>

::: {#ref-tidyverse .csl-entry}
Wickham, Hadley, Mara Averick, Jennifer Bryan, Winston Chang, Lucy D'Agostino McGowan, Romain François, Garrett Grolemund, et al. 2019. "Welcome to the [tidyverse]{.nocase}." *Journal of Open Source Software* 4 (43): 1686. <https://doi.org/10.21105/joss.01686>.
:::
:::
</div>

8 comments on commit bfbf453

@AlphaPrime7
Copy link
Owner Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

up

@AlphaPrime7
Copy link
Owner Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

up

@AlphaPrime7
Copy link
Owner Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

up

@AlphaPrime7
Copy link
Owner Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

up

@AlphaPrime7
Copy link
Owner Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

up

@AlphaPrime7
Copy link
Owner Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

up

@AlphaPrime7
Copy link
Owner Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

up

@AlphaPrime7
Copy link
Owner Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

up

Please sign in to comment.