bioconda tools

[stefanscripts]

Hi,

I am running Archiconda on my Jetson Xavier NX. I am trying to install tools from bioconda and conda-forge, but I always get an error that the tools aren't available from my current channels - even thoguh I have both bioconda and conda-forge channels in my list.

Did anyone experience the same issue? Any fixes?

Cheers and thanks,
Stefan

[hmaarrfk]

this project is mostly defunct and had been integrated into conda forge. unsure about bioconda

[stefanscripts]

So what does that mean for my issue? Do you have any ideas what to do?

[hmaarrfk]

did installing miniforge work? if so, that was the extent of the ambitions of this project.

[hmaarrfk]

if not, please post an issue on the miniforge installer. i am interested in ensuring that miniforge works with the appropriate haedware and kernel

[hmaarrfk]

https://github.com/conda-forge/miniforge/

[stefanscripts]

Hi, Sorry for my late reply. I got derailed with other stuff. I'm off to Peru in two weeks and working n setting up my Jetson Xavier NX again. Miniorge was easy to install and it works well for creating environments, but installing tools from bioconda keeps failing. (NGSpeciesID) ***@***.***:~/Downloads$ conda install -c bioconda minimap2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. PackagesNotFoundError: The following packages are not available from current channels: - minimap2 Current channels: - https://conda.anaconda.org/bioconda/linux-aarch64 - https://conda.anaconda.org/bioconda/noarch - https://conda.anaconda.org/conda-forge/linux-aarch64 - https://conda.anaconda.org/conda-forge/noarch To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. Any idea what's going on?? Cheers and thanks! Stefan Sent with [ProtonMail](https://protonmail.com/) Secure Email. ‐‐‐‐‐‐‐ Original Message ‐‐‐‐‐‐‐

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On Saturday, May 29th, 2021 at 6:47 PM, Mark Harfouche ***@***.***> wrote: this project is mostly defunct and had been integrated into conda forge. unsure about bioconda — You are receiving this because you authored the thread. Reply to this email directly, [view it on GitHub](#32 (comment)), or [unsubscribe](https://github.com/notifications/unsubscribe-auth/AL5UXR3KBMYLXUZWB7ZGQFDTQELDFANCNFSM45YOEO6Q).