uBdbs-catalog

This catalog intends to be a collective effort towards the construction of a useful catalog of databases of bacteria, mobile elements and so on. Anything that can be considered useful or related with bacterial identification/typing.

Bacteria

To be filled...

Mobile elements

Plasmids

• pATLAS - last update 1/2018 👍
• PlasmidFinder
• NCBI refseq - last update 1/2018
• ACLAME - last update 8/2009
• PlasmidProfiler - last update 3/2017

Integrative and conjugative elements (ICEs)

• ICEberg - last update 8/2011

Bacteriophages

• ENA phages - last update 5/2015
• NCBI phages
• ACLAME - last update 8/2009
• PHASTER
• PHAST - last update 12/2016

Insertion sequences (ISs)

• ISFinder

Transposons

• Tn registry
• ACLAME - last update 8/2009

Ontologies

• CARD's draft Mobilome Ontology (MOBIO)

Resistance genes

• ARDB - last update 7/2009 👎
• CARD
• Resfams - last update 1/1015 (v1.2)
• ResFinder

Metal resistance databases

• BacMet

Virulence genes

• VFDB
• VirulenceFinder
• CARD's draft Virulence Ontology (VIRO)

Bacterial Single-Copy Gene

• Campbell et al
• Rinke et al
• Seemann T
• Simão et al