Code modifications in the 2nd round review of JOSS paper.

[nbwuzhe]

We are collecting all possible code modifications here during the 2nd round of JOSS paper review, and will have another release once the paper is finalized.

[codecov]

Codecov Report

Attention: 5 lines in your changes are missing coverage. Please review.

Comparison is base (d3d59f7) 69.10% compared to head (09fe1dd) 68.52%.

Files	Patch %	Lines
src/utils/utils.jl	0.00%	5 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main      #26      +/-   ##
==========================================
- Coverage   69.10%   68.52%   -0.58%     
==========================================
  Files           4        4              
  Lines         356      359       +3     
==========================================
  Hits          246      246              
- Misses        110      113       +3     

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[alexjaffray]

@nbwuzhe also need to include the fix in plot_reconstruction

[nbwuzhe]

@nbwuzhe also need to include the fix in plot_reconstruction

The signature of plot_reconstruction is correct. Just the script has an scrubbed argument when calling it, which has been fixed in the same commit.

[alexjaffray]

@nbwuzhe I missed that, but it makes sense now. Thanks for fixing those issues and thanks @felixhorger for bringing them up to us