This repo contains programs and files to run APoc against a PDB library. APoc can perform numerous structural alignment tasks but, for our analyses, we are mainly focused on the TMalign function for a query structure against a library of structures.
apoc -- Source code, binary, and examples of APoc. scripts -- Auxiliary perl scripts for preparing APoc runs and parsing its output. runs -- Scripts for running APoc on Andes with a focus on TMalign.
Each subdirectory contains its own README file with focused details.