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Version 0.2.2 released. #63

Merged
merged 32 commits into from
Apr 15, 2014
Merged

Version 0.2.2 released. #63

merged 32 commits into from
Apr 15, 2014

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alneberg
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Major changes:

  • The all coverage column is calculated after per sample normalization

Minor changes:

  • Simplified installation procedure using Anaconda and/or Docker.
  • Extended setup.py to ease installation via pypi.
  • Improved performance for the PROKKA_COG script.

alneberg and others added 30 commits April 1, 2014 15:36
@alneberg
More transparent listing of dependencies in README
ca3a3f2
@alneberg
Removed argparse as dependency (included in 2.7.* python), added more…
5f018ca 
… python dependencies in setup.py
@alneberg
Install dependencies with conda in travis
b773486
@binnisb
Added the Dockerfile that genarates image binnisb/concoct_0.2.1
7c1c315
@binnisb
Made the PATH variable contain miniconda
e470a1c
@alneberg
Typo in miniconda path, thanks @binnisb
97ba8e7
@alneberg
Trying travis without some low level packages, should be dealt with b…
e5f5c20 
…y anaconda
@binnisb
Removed unneeded dependencies libatlas, liblapack and gfortram and ad…
bbe2dae 
…ded atlas in conda
@binnisb
Fixed path env variable
072297b
@binnisb
Include Docker and Ubuntu installation
6c73f1b
@binnisb
Included reasoning for using Docker.
dbb7a45
@binnisb
removed gsl-bin and git, fixed PATH and download tar of concoct 0.2.1…
18bec2e 
… instead of git
@binnisb
Merge branch 'docker' of github.com:binnisb/CONCOCT into docker
132f054
@alneberg
Added cython to dependencies
937df16
@alneberg
Added optional dependencies to readme
2b74148
@alneberg
Merge pull request #56 from binnisb/docker
d2a561e 
Added the Dockerfile
@alneberg
Merge branch 'develop' into clarify_dependencies
a0d59fb
@alneberg
Updated installation procedure in README
f11dc57
@alneberg
Removed installation via pip and installation using apt-get
bb88ea1
@alneberg
Changed PROKKA_COG.py to use argparse and biopython
85760f0
@alneberg
Added cython to setup.py
36a2380
@binnisb
Merge pull request #57 from alneberg/PROKKA_COG
0ddb66b 
Changed PROKKA_COG.py to use argparse and biopython
@alneberg
Added R packages to optional dependencies in readme
3749ce8
@alneberg
Formatting fix in readme
e5c55cf
@alneberg
Further formatting issues
ed500e4
@alneberg
Does not describe how to install optional dependencies
e871f17
@binnisb
Merge pull request #55 from alneberg/clarify_dependencies
d801c1b 
Clarify dependencies
@alneberg
Add total coverage after per sample normalization
a6e2d9e
@alneberg
Merge pull request #61 from alneberg/fix_input.py
9b373f4 
Fix input.py, self.merge()
@alneberg
Bumping version to 0.2.2
356e0c7
alneberg added a commit that referenced this pull request Apr 15, 2014
@alneberg
Merge pull request #63 from BinPro/develop
65376c0 
Version 0.2.2 released.
@alneberg alneberg merged commit 65376c0 into master Apr 15, 2014
@alneberg alneberg mentioned this pull request Apr 15, 2014
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2 participants
@alneberg @binnisb